|
Status |
Public on Mar 29, 2012 |
Title |
genomic DNA from cord blood sample 11AB-135B |
Sample type |
genomic |
|
|
Source name |
cord blood sample 11AB-135B
|
Organism |
Homo sapiens |
Characteristics |
birth weight (g): 3667 gestational age (wks): 40.29 birth weight (%): 75 tissue: Cord Blood
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was extracted and purified from samples using Qiagen DNeasy Kit according to standard instructions. The Zymo Bisulphite Conversion Kit was used to convert the DNA samples.
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
Cord Blood DNA 11AB-135B
|
Data processing |
BeadStudio software v3.2
|
|
|
Submission date |
Mar 26, 2012 |
Last update date |
Mar 29, 2012 |
Contact name |
Nahid Turan |
E-mail(s) |
nturan@temple.edu
|
Phone |
215-707-7302
|
Organization name |
Temple University School of Medicine
|
Department |
Fels Institute
|
Street address |
3307 North Broad Street, AHB
|
City |
Philadelphia |
State/province |
PA |
ZIP/Postal code |
19140 |
Country |
USA |
|
|
Platform ID |
GPL8490 |
Series (2) |
GSE36812 |
Epigenome analysis of cord blood samples from newborns |
GSE36831 |
DNA methylation and gene expression differences at growth related genes correlate with birth weight. |
|