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Sample GSM903 Query DataSets for GSM903
Status Public on Feb 12, 2002
Title Elutriation2:Sample2:Time5.5hrs
Sample type RNA
 
Channel 1
Source name Ref Pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 2.2.12
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n82
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE24 Elutriation time course

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1610 1544 978 1547 1131 462 416 371 1010 1381 .893 0 .046 .978 20 26 .865 .968 1.156 1.033 .908 966 80 11 21 31 41 .046
2 1638 1552 1437 2358 1918 504 440 393 1712 2105 .89 0 .253 1.334 33 45 .749 .839 1.335 1.191 1.047 756 80 11 21 41 51 .253
3 1671 1600 2158 3042 2546 550 496 443 2273 2716 .919 0 .075 1.176 46 60 .848 .949 1.18 1.053 1.039 667 80 11 21 51 61 .075
4 1730 1672 242 727 143 618 584 521 128 649 .681 0 -.919 .52 8 18 1.692 1.891 .591 .529 .398 677 80 11 21 61 71 -.919
5 1786 1736 911 1847 1191 675 656 586 1063 1649 .835 0 .223 1.101 32 75 .765 .857 1.307 1.167 1.077 677 80 11 21 71 81 .223
6 1882 1776 339 1086 390 732 696 621 349 970 .656 0 .042 .816 11 20 .869 .971 1.15 1.029 .559 677 80 11 21 82 92 .042
7 1831 1776 528 1169 465 717 704 629 415 1044 .723 0 -.347 .9 18 33 1.135 1.272 .881 .786 .496 661 80 11 21 92 102 -.347
8 1839 1784 397 943 247 711 696 621 221 842 .497 0 -.845 .55 15 31 1.607 1.796 .622 .557 .199 651 80 11 21 102 112 -.845
9 1840 1784 326 955 267 714 688 614 239 853 .551 0 -.448 .778 10 17 1.221 1.364 .819 .733 .367 651 80 11 21 112 122 -.448
10 1821 1800 236 856 168 711 688 614 150 764 .746 0 -.654 .758 11 18 1.405 1.573 .712 .636 .618 651 80 11 21 122 132 -.654
11 1841 1824 264 918 206 730 712 636 184 820 .814 0 -.521 .669 13 21 1.282 1.435 .78 .697 .739 651 80 11 21 132 142 -.521
12 1857 1832 332 1051 315 753 736 657 281 938 .796 0 -.241 .667 12 25 1.054 1.181 .949 .846 .834 651 80 11 21 142 152 -.241
13 1878 1864 192 772 20 760 752 671 18 689 .462 0 -3.415 .381 2 3 9.6 10.667 .104 .094 .287 651 80 11 21 152 162 -3.415
14 1972 1896 443 1201 433 825 768 686 386 1072 .773 0 -.199 .781 11 16 1.023 1.148 .977 .871 .851 651 80 11 21 162 172 -.199
15 2006 1920 721 1699 923 853 776 693 824 1517 .893 0 .193 1.071 18 30 .781 .875 1.28 1.143 1.109 651 80 11 21 172 182 .193
16 2023 1920 608 1538 786 830 752 671 702 1373 .81 0 .207 .923 13 21 .774 .866 1.293 1.155 1.025 651 80 11 21 182 192 .207
17 2024 1912 380 1100 356 817 744 664 318 982 .794 0 -.257 .804 16 27 1.067 1.195 .937 .837 .727 651 80 11 21 192 202 -.257
18 1959 1880 179 732 20 745 712 636 18 654 .299 0 -3.314 .333 3 2 8.95 9.944 .112 .101 .12 651 80 11 21 202 212 -3.314
19 1914 1848 39376 1354 674 693 680 607 602 1209 .796 0 -6.031 .013 95 55 58.421 65.409 .017 .015 .018 651 80 11 21 212 222 -6.031
20 1872 1816 2026 4408 3744 683 664 593 3343 3936 .647 0 .723 2.014 52 82 .541 .606 1.848 1.65 .983 651 80 11 21 222 232 .723

Total number of rows: 7680

Table truncated, full table size 964 Kbytes.




Supplementary data files not provided
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