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Sample GSM906 Query DataSets for GSM906
Status Public on Feb 12, 2002
Title Elutriation2:Sample2:Time6.0hrs
Sample type RNA
 
Channel 1
Source name Ref Pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 2.2.13
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n83
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE24 Elutriation time course

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 2012 1880 143 756 228 554 528 550 238 788 .65 0 .735 .6 6 11 .627 .601 1.594 1.664 .275 1156 80 45 55 33 43 .735
2 1891 1880 572 1276 740 538 536 558 771 1329 .88 0 .431 1.352 17 36 .773 .742 1.294 1.348 .865 946 80 45 55 43 53 .431
3 1888 1864 643 1421 877 553 544 567 913 1480 .905 0 .506 1.262 20 41 .733 .704 1.364 1.42 1.122 825 80 45 55 54 64 .506
4 1904 1888 74 636 84 565 552 575 88 663 .521 0 .25 .591 0 10 .881 .841 1.135 1.189 .27 825 80 45 55 64 74 .25
5 1899 1880 744 3793 3241 569 552 575 3376 3951 .935 0 2.182 4.258 26 61 .23 .22 4.356 4.538 3.705 815 80 45 55 74 84 2.182
6 1898 1872 214 687 119 580 568 592 124 716 .71 0 -.787 .625 7 16 1.798 1.726 .556 .579 .43 815 80 45 55 84 94 -.787
7 1912 1888 217 763 187 591 576 600 195 795 .759 0 -.154 .802 5 31 1.16 1.113 .862 .899 .585 815 80 45 55 94 104 -.154
8 1918 1896 257 832 248 597 584 608 259 867 .768 0 .011 .974 7 31 1.036 .992 .965 1.008 .563 815 80 45 55 104 114 .011
9 1930 1912 148 644 44 612 600 625 46 671 .527 0 -1.686 .385 2 5 3.364 3.217 .297 .311 .291 815 80 45 55 114 124 -1.686
10 1924 1904 162 715 115 615 600 625 120 745 .727 0 -.433 .563 3 15 1.409 1.35 .71 .741 .507 815 80 45 55 124 134 -.433
11 1910 1896 198 755 155 608 600 625 161 786 .783 0 -.298 .714 8 17 1.277 1.23 .783 .813 .602 815 80 45 55 134 144 -.298
12 1916 1904 268 800 200 613 600 625 208 833 .818 0 -.366 .643 8 25 1.34 1.288 .746 .776 .628 815 80 45 55 144 154 -.366
13 1929 1904 618 2 623 616 642 2 644 .339 0 .219 0 1 .165 815 80 45 55 154 164
14 1965 1920 156 767 143 673 624 650 149 799 .715 0 -.066 .793 2 8 1.091 1.047 .917 .955 .837 815 80 45 55 164 174 -.066
15 1993 1936 549 1421 789 695 632 658 822 1480 .969 0 .582 1.051 10 26 .696 .668 1.437 1.497 1.419 815 80 45 55 174 184 .582
16 1990 1928 369 1067 435 699 632 658 453 1111 .933 0 .296 .704 6 15 .848 .815 1.179 1.228 .998 815 80 45 55 184 194 .296
17 2033 1936 223 839 199 706 640 667 207 874 .412 0 -.107 .966 5 23 1.121 1.077 .892 .928 .229 815 80 45 55 194 204 -.107
18 2017 1936 234 681 41 665 640 667 42 709 .246 0 -2.478 .237 5 0 5.707 5.571 .175 .179 .057 815 80 45 55 204 214 -2.478
19 2037 1968 37335 850 186 671 664 692 193 885 .714 0 -7.596 .006 90 27 200.726 193.446 .005 .005 .006 815 80 45 55 214 224 -7.596
20 2077 2008 1446 3707 3011 701 696 725 3136 3861 .717 0 1.117 2.274 38 78 .48 .461 2.082 2.169 1.251 815 80 45 55 224 234 1.117

Total number of rows: 7680

Table truncated, full table size 948 Kbytes.




Supplementary data files not provided
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