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Sample GSM908121 Query DataSets for GSM908121
Status Public on Mar 04, 2013
Title E176_07_Placebo_1_A
Sample type RNA
Source name PBMC
Organism Homo sapiens
Characteristics sample: E176_07_Placebo_1
treatment: Placebo
weeks of treatment: 1
subject: E176_07
Treatment protocol Human PBMCs were isolated by stratifying of whole blood on Ficoll-Paque PREMIUM (GE Healthcare; Pscataway, NJ). Subjects were randomized in a 1:1 fashion to receive either metreleptin or placebo, for a period of 36 weeks in the form of a self-administered daily subcutaneous injection.
Extracted molecule total RNA
Extraction protocol RNA was isolated from PBMCs using the manufacturer’s protocol for Trizol Reagent (Invitrogen, Grand Island, NY) and further purified using RNAeasy spin columns (Qiagen, Valencia, CA). RNA concentration and purity were determined from 260nm/280 nm absorbances. RNA integrity was determined using the Agilent 2100 BioChip (Agilent Technologies, Palo Alto, CA).
Label biotin
Label protocol biotin, according to manufacturer's recommendations
Hybridization protocol cRNA, according to manufacturer's recommendations
Scan protocol according to manufacturer's recommendations
Data processing RMA; RMA preprocessed log2 expression values
Submission date Apr 02, 2012
Last update date Mar 04, 2013
Contact name Dario Greco
Organization name Tampere University
Department Faculty of Medicine and Health Technology
Lab Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE)
Street address Arvo ylpön Katu 34
City Tampere
ZIP/Postal code 33520
Country Finland
Platform ID GPL15395
Series (1)
GSE36990 Gene expression profile of PBMCs in response to metreleptin treatment at different time points.

Data table header descriptions
VALUE log2 RMA normalized signal

Data table
10000_at 3.261555429
10001_at 5.25633687
10002_at 2.760998471
10003_at 3.53443573
100048912_at 2.621899486
10004_at 3.824924702
10005_at 5.210478937
10006_at 6.899759167
10007_at 4.735056521
10009_at 2.506174257
1000_at 2.738014534
10010_at 5.86990571
100126791_at 3.608992952
100128124_at 2.687940478
100128640_at 3.767749834
100129128_at 2.083547204
100129250_at 5.956489821
100129271_at 3.237794847
100129482_at 4.797731278
100129973_at 2.305542718

Total number of rows: 12139

Table truncated, full table size 242 Kbytes.

Supplementary file Size Download File type/resource
GSM908121_Holly_06.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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