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Sample GSM911907 Query DataSets for GSM911907
Status Public on Apr 28, 2012
Title Colo829 infected with BANCR shRNA 2
Sample type RNA
Source name Colo829 melanoma cells
Organism Homo sapiens
Characteristics cell line: Colo829 melanoma cells
genotype/variation: BANCR knockdown
Treatment protocol Cells were lentivirally infected with either SCR control shRNA or independent shRNAs targeting BANCR
Growth protocol Colo829 cells were grown in RPMI 1640 medium supplemented with 10% FCS and antibiotics
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kits were used to isolate total RNA.
Label biotin
Label protocol Affymetrix 3' IVT Express Kit
Hybridization protocol Affymetrix GeneChip Hybridization, Wash, and Stain Kit
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description shRNA 2
Data processing RMA normalization using justRMA package in R 2.11.1
Submission date Apr 10, 2012
Last update date Oct 11, 2022
Contact name Douglas Porter
Organization name Stanford
Department Dermatology
Lab Khavari
Street address 269 Campus Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
Platform ID GPL570
Series (2)
GSE37132 Oncogenic BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration [Affymetrix]
GSE37169 Oncogenic BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration

Data table header descriptions
VALUE RMA normalized signal

Data table
1007_s_at 9.463282572
1053_at 9.035764601
117_at 5.163823731
121_at 7.547192356
1255_g_at 3.470575142
1294_at 7.695951869
1316_at 5.891364705
1320_at 4.502188104
1405_i_at 3.984364943
1431_at 3.480156162
1438_at 5.712906808
1487_at 8.486706206
1494_f_at 5.380456704
1552256_a_at 9.830051093
1552257_a_at 9.609561325
1552258_at 4.303561595
1552261_at 4.17134169
1552263_at 6.665911382
1552264_a_at 8.441830039
1552266_at 3.185827918

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.

Supplementary file Size Download File type/resource
GSM911907_bancri_2.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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