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Sample GSM915780 Query DataSets for GSM915780
Status Public on Apr 17, 2012
Title FHCRCAML16901970
Sample type RNA
 
Source name leukemia
Organism Homo sapiens
Characteristics diagnosis: AML
cell type: Cryopreserved MNCs
Extracted molecule total RNA
Extraction protocol Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
Label Biotin
Label protocol Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life Technologies, Farmingdale, NY) according to manufacturer's protocol.
 
Hybridization protocol Hybridization was performed according to Affymetrix protocol.
Scan protocol Arrays were scanned according to Affymetrix protocol.
Description GSM239485
6AML_34P_M_45M_9_PB_I_1970
Cryopreserved MNCs
Data processing .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Model-based expression levels were computed from .CEL files using dChip software after normalization by invariant set method.
 
Submission date Apr 16, 2012
Last update date Apr 17, 2012
Contact name Sebastian K Ochsenreither
Organization name Charite Berlin
Department Hematology/Oncology
Street address Hindenburgdamm 30
City Berlin
State/province Berlin
ZIP/Postal code 12203
Country Germany
 
Platform ID GPL96
Series (1)
GSE37307 Aberrant expressed genes in AML
Relations
Reanalysis of GSM239485

Data table header descriptions
ID_REF
VALUE linear normalized signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 339.71
AFFX-BioB-M_at 358.14
AFFX-BioB-3_at 346.1
AFFX-BioC-5_at 665.46
AFFX-BioC-3_at 681.11
AFFX-BioDn-5_at 776.57
AFFX-BioDn-3_at 2221.76
AFFX-CreX-5_at 6251.5
AFFX-CreX-3_at 7645.43
AFFX-DapX-5_at 15.23
AFFX-DapX-M_at 23.02
AFFX-DapX-3_at 19.16
AFFX-LysX-5_at 8.8
AFFX-LysX-M_at 7.67
AFFX-LysX-3_at 9.97
AFFX-PheX-5_at 2.5
AFFX-PheX-M_at 5.41
AFFX-PheX-3_at 56.89
AFFX-ThrX-5_at 8.12
AFFX-ThrX-M_at 19.19

Total number of rows: 22283

Table truncated, full table size 368 Kbytes.




Supplementary file Size Download File type/resource
GSM915780_6AML_34P_M_45M_9_PB_I_1970.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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