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GEO accession:
Sample GSM92166
Query DataSets for GSM92166
Status
Public on Jan 18, 2006
Title
YL113 od 1.4
Sample type
RNA
Source name
YL113 plamktonic culture
Organism
Pseudomonas aeruginosa
Characteristics
PAOR3 containing qscR under L-arabinose control promoter in attb site
Extracted molecule
total RNA
Label
biotin
Description
RNA extracted from culture at optical density at 600 nm of 1.4
Data processing
standard Affymetrix procedures
Submission date
Jan 12, 2006
Last update date
Jan 17, 2006
Contact name
Yannick Lequette
E-mail(s)
ylew@u.washington.edu
Organization name
University of Washington
Department
Microbiology HSB -I420 BOX 357242
Lab
Pr Pete Greenberg Lab
Street address
1959 NE PACiFiC
City
Seattle
State/province
WA
ZIP/Postal code
98195
Country
USA
Platform ID
GPL84
Series (1)
GSE4026
A Distinct QscR Regulon in the Pseudomonas aeruginosa Quorum Sensing Circuit
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table
ID_REF
VALUE
ABS_CALL
AFFX-YEL002C_WPB1_at
0.3
A
AFFX-YEL018W_at
5.6
A
AFFX-YEL024W_RIP1_at
161
P
AFFX-YFL039C_ACT1_at
0.3
A
AFFX-YER148W_SPT15_at
92.6
P
AFFX-YER022W_SRB4_at
0.4
A
AFFX-Athal_GAPDH_at
2.5
A
AFFX-Athal_ubq_at
2.7
A
AFFX-Athal_actin_at
0.6
A
AFFX-Bsubtilis_dapB_at
14.5
A
AFFX-Bsubtilis_lys_at
47.9
P
AFFX-Bsubtilis_pheB_at
216.8
P
AFFX-Bsubtilis_thrC_at
86.6
A
AFFX-Bsubtilis_trpD_at
61.1
A
Pae_flgK_at
19.1
A
Pae_flgL_at
31.5
A
Pae_orfA_vioA_at
52
A
Pae_orfB_at
54.3
A
Pae_orfC_at
100.5
A
Pae_orfD_at
17.4
A
Total number of rows:
5900
Table truncated, full table size
115 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM92166.CEL.gz
1.1 Mb
(ftp)
(http)
CEL
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