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GEO accession:
Sample GSM92171
Query DataSets for GSM92171
Status
Public on Jan 18, 2006
Title
YL117 od 1.4
Sample type
RNA
Source name
YL117 planktonic culture
Organism
Pseudomonas aeruginosa
Characteristics
PAOR3 containing qscR deleted in DNA binding domain under L-arabinose control promoter in attb site
Extracted molecule
total RNA
Label
biotin
Description
RNA extracted from culture at optical density at 600 nm of 1.4
Data processing
standard Affymetrix procedures
Submission date
Jan 12, 2006
Last update date
Jan 17, 2006
Contact name
Yannick Lequette
E-mail(s)
ylew@u.washington.edu
Organization name
University of Washington
Department
Microbiology HSB -I420 BOX 357242
Lab
Pr Pete Greenberg Lab
Street address
1959 NE PACiFiC
City
Seattle
State/province
WA
ZIP/Postal code
98195
Country
USA
Platform ID
GPL84
Series (1)
GSE4026
A Distinct QscR Regulon in the Pseudomonas aeruginosa Quorum Sensing Circuit
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table
ID_REF
VALUE
ABS_CALL
AFFX-YEL002C_WPB1_at
59.1
A
AFFX-YEL018W_at
84.9
A
AFFX-YEL024W_RIP1_at
1141.8
P
AFFX-YFL039C_ACT1_at
63.4
M
AFFX-YER148W_SPT15_at
303.9
P
AFFX-YER022W_SRB4_at
2.4
A
AFFX-Athal_GAPDH_at
92.7
A
AFFX-Athal_ubq_at
10.5
A
AFFX-Athal_actin_at
6.7
A
AFFX-Bsubtilis_dapB_at
137.3
M
AFFX-Bsubtilis_lys_at
275.3
P
AFFX-Bsubtilis_pheB_at
1318.2
P
AFFX-Bsubtilis_thrC_at
467.3
P
AFFX-Bsubtilis_trpD_at
12.6
A
Pae_flgK_at
155.2
A
Pae_flgL_at
25.9
A
Pae_orfA_vioA_at
210
A
Pae_orfB_at
218.3
A
Pae_orfC_at
64.5
A
Pae_orfD_at
48.2
A
Total number of rows:
5900
Table truncated, full table size
115 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM92171.CEL.gz
1.0 Mb
(ftp)
(http)
CEL
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