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GEO accession:
Sample GSM92185
Query DataSets for GSM92185
Status
Public on Jan 18, 2006
Title
PAOR3 replicate 2 od 1.4
Sample type
RNA
Source name
PAOR3 planktonic culture
Organism
Pseudomonas aeruginosa
Characteristics
PAOI knock-out in qscR gene
Extracted molecule
total RNA
Label
biotin
Description
RNA extracted from culture at optical density at 600 nm of 1.4
Data processing
standard Affymetrix procedures
Submission date
Jan 12, 2006
Last update date
Jan 17, 2006
Contact name
Yannick Lequette
E-mail(s)
ylew@u.washington.edu
Organization name
University of Washington
Department
Microbiology HSB -I420 BOX 357242
Lab
Pr Pete Greenberg Lab
Street address
1959 NE PACiFiC
City
Seattle
State/province
WA
ZIP/Postal code
98195
Country
USA
Platform ID
GPL84
Series (1)
GSE4026
A Distinct QscR Regulon in the Pseudomonas aeruginosa Quorum Sensing Circuit
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table
ID_REF
VALUE
ABS_CALL
AFFX-Athal_actin_at
10.9
A
AFFX-Athal_GAPDH_at
33.9
A
AFFX-Athal_ubq_at
23.4
A
AFFX-Bsubtilis_dapB_at
122
P
AFFX-Bsubtilis_lys_at
294.6
P
AFFX-Bsubtilis_pheB_at
2809.3
P
AFFX-Bsubtilis_thrC_at
646.4
P
AFFX-Bsubtilis_trpD_at
150.3
A
AFFX-YEL002C_WPB1_at
37.2
A
AFFX-YEL018W_at
105.1
P
AFFX-YEL024W_RIP1_at
1265.3
P
AFFX-YER022W_SRB4_at
0.7
A
AFFX-YER148W_SPT15_at
440.2
P
AFFX-YFL039C_ACT1_at
30.1
A
ig_1046911_1047549_at
208
A
ig_1047549_1046911_at
679.9
P
ig_1063544_1064555_at
450.6
P
ig_1064555_1063544_at
403.3
P
ig_1087095_1087843_at
310.3
A
ig_1087843_1087095_at
876.8
P
Total number of rows:
5900
Table truncated, full table size
116 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM92185.CEL.gz
1.0 Mb
(ftp)
(http)
CEL
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