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Sample GSM924 Query DataSets for GSM924
Status Public on Feb 12, 2002
Title alpha factor release sample029
Sample type RNA
 
Channel 1
Source name asynchronous control (prep3)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 29
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n103
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE22 Alpha-factor block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 279 280 660 1071 791 283 280 298 841 1139 .943 0 .35 1.25 31 36 .834 .785 1.198 1.274 1.077 1227 69 16 27 54 65 .35
2 282 280 1152 1750 1470 285 280 298 1564 1862 .933 0 .441 1.24 43 46 .784 .737 1.276 1.358 1.201 1082 69 15 26 64 75 .441
3 283 280 1074 1560 1280 286 280 298 1362 1660 .937 0 .343 1.264 44 50 .839 .789 1.192 1.268 1.086 987 69 15 26 74 85 .343
4 282 280 578 1019 739 285 280 298 786 1084 .966 0 .443 1.28 27 33 .782 .735 1.279 1.36 1.19 982 69 15 26 84 95 .443
5 281 280 744 1575 1295 283 280 298 1378 1676 .951 0 .889 1.981 34 44 .575 .54 1.741 1.852 1.582 973 69 15 26 94 105 .889
6 279 280 160 471 191 282 280 298 203 501 .845 0 .343 1.197 18 23 .838 .788 1.194 1.269 1.054 964 69 15 26 104 115 .343
7 278 272 83 359 79 281 280 298 84 382 .836 0 .017 1 17 18 1.051 .988 .952 1.012 .976 955 69 15 26 114 125 .017
8 277 272 688 998 718 279 280 298 764 1062 .914 0 .151 1.066 75 72 .958 .901 1.044 1.11 1.011 950 69 15 26 124 135 .151
9 277 272 215 521 241 280 280 298 256 554 .944 0 .252 .995 23 21 .892 .84 1.121 1.191 .991 950 69 15 26 134 145 .252
10 277 272 98 354 74 279 280 298 79 377 .849 0 -.311 .853 14 14 1.324 1.241 .755 .806 .755 950 69 15 26 144 155 -.311
11 279 280 282 608 328 281 280 298 349 647 .957 0 .308 1.235 21 24 .86 .808 1.163 1.238 1.064 950 69 15 26 154 165 .308
12 280 272 279 582 302 285 280 298 321 619 .903 0 .202 .949 24 24 .924 .869 1.082 1.151 .987 950 69 15 26 164 175 .202
13 278 272 49 334 54 284 280 298 57 355 .877 0 .218 1 4 8 .907 .86 1.102 1.163 1.095 950 69 15 26 174 185 .218
14 287 280 46 357 77 292 280 298 82 380 .866 0 .834 1.413 8 10 .597 .561 1.674 1.783 1.202 950 69 15 26 184 195 .834
15 292 272 209 521 241 297 280 298 256 554 .93 0 .293 1.205 17 23 .867 .816 1.153 1.225 1.097 950 69 15 26 194 205 .293
16 291 272 104 384 104 290 280 298 111 409 .93 0 .094 1.013 13 14 1 .937 1 1.067 .958 950 69 15 26 204 215 .094
17 295 280 152 446 166 290 280 298 176 474 .931 0 .212 1.133 20 26 .916 .864 1.092 1.158 1.032 950 69 15 26 214 225 .212
18 323 280 39 303 31 284 272 289 33 322 .556 0 -.241 1 10 5 1.258 1.182 .795 .846 .409 950 69 15 26 224 235 -.241
19 316 280 8961 370 90 276 280 298 96 394 0 0 -6.544 .011 82 21 99.567 93.344 .01 .011 0 950 69 15 26 234 245 -6.544
20 316 280 178 671 391 277 280 298 416 714 .759 0 1.225 2.3 39 59 .455 .428 2.197 2.337 1.746 950 69 15 26 244 255 1.225

Total number of rows: 7680

Table truncated, full table size 928 Kbytes.




Supplementary data files not provided
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