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Sample GSM925 Query DataSets for GSM925
Status Public on Feb 12, 2002
Title heat shock 37 to 37, 20 minutes
Sample type RNA
 
Channel 1
Source name 37 t0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 37 t20
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.24 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n116
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL51
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 5418 6096 4213 5318 6294 6422 4299 0 -100 .839 10 9 0 1129 177 94 109 80 95
2 4710 5109 2000 6805 2062 4550 4743 4840 2104 6944 0 -100 1.091 46 50 .97 .951 1.031 1.052 0 919 177 93 108 97 112 .073
3 5539 5955 3669 5379 5666 5782 3744 0 -100 1.161 7 7 0 906 177 93 108 115 130
4 7176 7320 721 8396 1365 6978 7031 7174 1393 8567 0 -100 1.47 3 10 .528 .518 1.893 1.932 0 896 177 93 108 132 147 .95
5 5948 5646 223 5854 379 5739 5475 5587 386 5973 0 -100 1.271 5 6 .588 .578 1.7 1.731 0 909 177 92 107 150 165 .792
6 2675 2148 1680 2466 1957 1997 1714 .677 -100 1.035 2 1 .59 893 177 92 107 167 182
7 1009 599 183 765 154 917 611 623 158 781 .755 -100 .88 31 20 1.188 1.158 .842 .863 .668 896 177 92 107 184 199 -.212
8 491 387 382 469 401 409 390 .496 -100 .901 6 2 .354 919 177 91 106 202 217
9 599 332 251 460 328 335 256 .439 -100 .789 2 0 .296 906 177 91 106 219 234
10 761 338 139 505 278 284 142 .414 -100 1.867 0 0 .215 886 177 91 106 237 252
11 554 126 123 369 152 155 126 .302 -100 .667 1 1 .272 896 177 91 106 254 269
12 132 75 109 138 113 115 111 .193 -100 .593 11 2 .15 918 177 90 105 272 287
13 64 56 7 93 3 92 90 92 3 95 .146 -100 1 22 7 2.333 2.333 .429 .429 .199 893 177 90 105 289 304 -1.222
14 72 55 9 90 12 85 78 80 12 92 .393 -100 1 21 17 .75 .75 1.333 1.333 .235 896 177 90 105 306 321 .415
15 70 50 43 98 31 77 67 68 32 100 .558 -100 .923 48 36 1.387 1.344 .721 .744 .334 919 177 89 104 324 339 -.426
16 54 38 13 66 13 61 53 54 13 67 .127 -100 .862 35 26 1 1 1 1 .079 906 177 89 104 341 356 0
17 48 33 29 69 24 53 45 46 24 70 .542 -100 .838 44 39 1.208 1.208 .828 .828 .394 886 177 89 104 359 374 -.273
18 42 29 15 51 10 48 41 42 10 52 .447 -100 .883 36 26 1.5 1.5 .667 .667 .3 906 177 88 103 376 391 -.585
19 35 25 8 40 2 41 38 39 2 41 .377 -100 .929 27 18 4 4 .25 .25 .262 906 177 88 103 393 408 -2
20 28 20 5 34 6 32 28 29 6 35 .336 -100 .641 29 27 .833 .833 1.2 1.2 .252 896 177 88 103 411 426 .263

Total number of rows: 9216

Table truncated, full table size 1039 Kbytes.




Supplementary data files not provided
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