NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM929 Query DataSets for GSM929
Status Public on Feb 12, 2002
Title heat shock 25 to 37, 20 minutes
Sample type RNA
 
Channel 1
Source name 25 t0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 37 t20
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.24 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n119
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL51
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 11 9 69 21 12 12 9 9 11 20 .6 0 -2.6 .208 87 62 5.75 6.064 .174 .165 .17 1119 177 55 70 105 120 -2.6
2 8 7 12 16 8 9 8 8 8 15 .874 0 -.662 .667 45 35 1.5 1.582 .667 .632 .737 896 177 55 70 122 137 -.662
3 8 7 87 84 76 9 8 8 72 80 .89 0 -.272 .815 81 70 1.145 1.207 .874 .828 .917 896 177 55 70 140 155 -.272
4 9 7 6 14 5 11 9 9 5 13 .599 0 -.34 .778 46 38 1.2 1.265 .833 .79 .419 883 177 55 70 157 172 -.34
5 10 8 58 76 66 13 10 9 63 72 .905 0 .11 1.06 61 61 .879 .927 1.138 1.079 1.091 896 177 55 70 174 189 .11
6 10 8 9 19 9 12 10 9 9 18 .716 0 -.077 1.067 38 41 1 1.055 1 .948 .543 896 177 55 70 192 207 -.077
7 13 9 2 11 1 16 10 9 1 10 -.02 0 -1.077 .909 36 31 2 2.109 .5 .474 -.015 896 177 55 70 209 224 -1.077
8 13 8 3 16 6 19 10 9 6 15 .374 0 .923 1.111 37 48 .5 .527 2 1.897 .547 896 177 55 70 227 242 .923
9 9 8 1 10 2 12 8 8 2 9 .004 0 .923 .9 29 35 .5 .527 2 1.897 .004 896 177 55 70 244 259 .923
10 15 8 8 14 9 9 -1 8 .059 0 1.286 23 18 .059 886 177 55 70 262 277
11 29 11 8 36 23 26 13 12 22 34 .68 0 1.447 1.458 33 43 .348 .367 2.875 2.726 1.143 896 177 55 70 279 294 1.447
12 30 11 14 30 15 31 15 14 14 28 .993 0 .023 1.438 24 26 .933 .984 1.071 1.016 .897 896 177 55 70 297 312 .023
13 13 9 10 21 11 10 -1 9 -.036 0 .647 27 19 -.031 905 177 55 70 314 329
14 10 8 8 15 10 9 -2 8 -.134 0 1.5 27 18 -.107 919 177 55 70 332 347
15 10 9 10 17 12 11 -2 9 .001 0 1 25 15 .001 928 177 55 70 349 364
16 16 10 14 25 17 16 -3 13 -.012 0 1.5 23 12 -.013 928 177 55 70 367 382
17 113 12 9 95 70 210 25 24 66 90 .449 0 2.883 1.333 27 24 .129 .136 7.778 7.375 6.127 915 177 55 70 384 399 2.883
18 111 12 6 49 20 212 29 27 19 46 .572 0 1.66 2 38 22 .3 .316 3.333 3.161 3.642 928 177 55 70 401 416 1.66
19 31 9 470 121 101 169 20 19 96 115 .734 0 -2.295 1.167 40 24 4.653 4.907 .215 .204 .11 928 177 55 70 419 434 -2.295
20 9 8 1 12 16 14 13 -2 11 .176 0 1.5 31 17 .157 928 177 55 70 436 451

Total number of rows: 9216

Table truncated, full table size 1025 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap