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GEO accession:
Sample GSM92902
Query DataSets for GSM92902
Status
Public on Jan 28, 2006
Title
39144
Sample type
RNA
Source name
Parenchyma of an intact animal treated with estrogen
Organism
Bos taurus
Characteristics
both the raw and normalized values are log 2 based.
Extracted molecule
total RNA
Label
biotin
Description
Single channel hybridization of biotin-labeled samples detected by Cy3-streptavidin staining
Data processing
is based on the SAS Mixed Model
Submission date
Jan 18, 2006
Last update date
May 05, 2006
Contact name
Robert W Li
E-mail(s)
robert.li@ars.usda.gov
Phone
301-504-5185
Fax
301-504-8414
Organization name
USDA
Department
Animal & Natural Resources Institute
Lab
Bovine Functional Genomics Laboratory
Street address
Barc East
City
Beltsville
State/province
MD
ZIP/Postal code
20705
Country
USA
Platform ID
GPL3711
Series (1)
GSE4054
Estrogen-responsive genes in the parenchyma and fat pad of the bovine mammary gland by microarray analysis
Data table header descriptions
ID_REF
VALUE
is the raw value (log2, geometric mean) of the 4 replicate features (spots) for each 60mer oligo
VALUE_Normalized
is the residual value (log2) normalized based on the SAS Mixed model fit across all probes
Data table
ID_REF
VALUE
VALUE_Normalized
BOV00P0000000001
13.1091361411
1.0353187988
BOV00P0000000002
1.6285507556
0.7334202320
BOV00P0000000003
1.1995757456
1.7741690146
BOV00P0000000004
2.2402925097
1.7908069931
BOV00P0000000005
2.3488557912
1.8660727122
BOV00P0000000006
11.3386727563
2.0865036710
BOV00P0000000007
1.7433142741
1.3277273007
BOV00P0000000008
2.3983566656
1.8244754646
BOV00P0000000009
5.5330231180
1.0058534334
BOV00P0000000010
4.7095676088
1.0040265965
BOV00P0000000011
0.3882718244
1.0166274641
BOV00P0000000012
1.1847705846
0.9475273432
BOV00P0000000013
0.9995293288
0.8665812147
BOV00P0000000014
1.1951483345
0.9458141066
BOV00P0000000015
1.5282227944
1.2799189084
BOV00P0000000016
2.3430467360
1.2031446344
BOV00P0000000017
5.5364485304
4.1946753530
BOV00P0000000018
4.8457641333
2.7731149482
BOV00P0000000019
34.2275658097
1.1781175602
BOV00P0000000020
1.1248763754
1.2304888314
Total number of rows:
85217
Table truncated, full table size
3581 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM92902.CEL.gz
5.8 Mb
(ftp)
(http)
CEL
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