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GEO accession:
Sample GSM92903
Query DataSets for GSM92903
Status
Public on Jan 28, 2006
Title
39260
Sample type
RNA
Source name
Parenchyma of an OVX animal treated with corn oil (control)
Organism
Bos taurus
Characteristics
both the raw and normalized values are log 2 based.
Extracted molecule
total RNA
Label
biotin
Description
Single channel hybridization of biotin-labeled samples detected by Cy3-streptavidin staining
Data processing
is based on the SAS Mixed Model
Submission date
Jan 18, 2006
Last update date
May 11, 2012
Contact name
Robert W Li
E-mail(s)
robert.li@ars.usda.gov
Phone
301-504-5185
Fax
301-504-8414
Organization name
USDA
Department
Animal & Natural Resources Institute
Lab
Bovine Functional Genomics Laboratory
Street address
Barc East
City
Beltsville
State/province
MD
ZIP/Postal code
20705
Country
USA
Platform ID
GPL3711
Series (1)
GSE4054
Estrogen-responsive genes in the parenchyma and fat pad of the bovine mammary gland by microarray analysis
Data table header descriptions
ID_REF
VALUE
is the raw value (log2, geometric mean) of the 4 replicate features (spots) for each 60mer oligo
VALUE_Normalized
is the residual value (log2) normalized based on the SAS Mixed model fit across all probes
Data table
ID_REF
VALUE
VALUE_Normalized
BOV00P0000000001
14.1340898804
1.1354233808
BOV00P0000000002
2.9169241207
1.3361852638
BOV00P0000000003
1.0032696008
1.5092977532
BOV00P0000000004
1.8679935377
1.5188307546
BOV00P0000000005
1.9928372109
1.6104008473
BOV00P0000000006
10.6640345858
1.9960362994
BOV00P0000000007
0.8796185562
0.6814241796
BOV00P0000000008
1.7115783589
1.3243750905
BOV00P0000000009
7.7697710818
1.4367142512
BOV00P0000000010
7.3649705947
1.5970744320
BOV00P0000000011
0.6850448230
1.8244623621
BOV00P0000000012
2.2955148174
1.8673578305
BOV00P0000000013
0.7492380105
0.6607291823
BOV00P0000000014
1.4368361963
1.1565946921
BOV00P0000000015
1.1281667915
0.9610789204
BOV00P0000000016
1.6092114995
0.8405043643
BOV00P0000000017
2.8423576399
2.1904622237
BOV00P0000000018
4.2498519266
2.4738271847
BOV00P0000000019
57.0793434361
1.9983959569
BOV00P0000000020
0.6131730387
0.6822536837
Total number of rows:
85197
Table truncated, full table size
3580 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM92903.CEL.gz
5.7 Mb
(ftp)
(http)
CEL
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