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Sample GSM929640 Query DataSets for GSM929640
Status Public on Jun 01, 2012
Title Induced pluripotent cells [KMOS_2]
Sample type RNA
 
Source name iPSC generated with KMOS
Organism Homo sapiens
Characteristics cell type: iPS cells
genotype: Normal
Growth protocol Matrigel coated culture dishes and mTeSR
Extracted molecule total RNA
Extraction protocol Extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Hybridization were followed standard Affymetrix protocol in Affymetrix GeneChip Hybridization Oven 640
Scan protocol GeneChips were scanned using theAffymetrix GeneChip Scanner 3000 7G
Description Gene expression data from iPSC
Data processing The data were analyzed with Affymetrix Expression Console using Affymetrix default analysis settings and RMA as normalization method.
 
Submission date May 10, 2012
Last update date Jun 01, 2012
Contact name Leng Han
E-mail(s) hanleng0926@hotmail.com
Organization name Stanford University
Street address 265 Campus Dr
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL570
Series (1)
GSE37896 Expression data from iPSCs generated with Yamanaka factors and miR-302 cluster

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
AFFX-BioB-5_at 8.51
AFFX-BioB-M_at 8.44
AFFX-BioB-3_at 8.24
AFFX-BioC-5_at 9.69
AFFX-BioC-3_at 10.26
AFFX-BioDn-5_at 11.22
AFFX-BioDn-3_at 12.49
AFFX-CreX-5_at 13.49
AFFX-CreX-3_at 13.8
AFFX-DapX-5_at 7.97
AFFX-DapX-M_at 9.63
AFFX-DapX-3_at 10.17
AFFX-LysX-5_at 5.66
AFFX-LysX-M_at 5.69
AFFX-LysX-3_at 6.71
AFFX-PheX-5_at 6.19
AFFX-PheX-M_at 6.51
AFFX-PheX-3_at 7.73
AFFX-ThrX-5_at 6.52
AFFX-ThrX-M_at 7.06

Total number of rows: 54675

Table truncated, full table size 842 Kbytes.




Supplementary file Size Download File type/resource
GSM929640_KMOS_2.CEL.gz 4.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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