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Sample GSM929853 Query DataSets for GSM929853
Status Public on Jul 01, 2012
Title Control 55
Sample type RNA
 
Source name EA_Healthy_PBMCs
Organism Homo sapiens
Characteristics ethnicity: European descent American (EA)
cell type: peripheral blood mononuclear cells
diagnosis: Healthy
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol Samples were hybridized with Affymetrix GeneChip Human Exon 1.0 ST Arrays per manufacturer’s instructions.
Scan protocol Array scanning was performed according to the manufacturer's instruction by the University of Chicago Functional Genomics Facility.
Description Gene expression data from PBMC total RNA from healthy controls.
Healthy_control_55
Data processing The transcript expression data were summarized by RMA using the Affymetrix Power Tools (v.1.12.0) and were later corrected for batch effect using the R COMBAT script.
 
Submission date May 10, 2012
Last update date Jul 01, 2012
Contact name Tong Zhou
Organization name University of Nevada School of Medicine
Street address 1664 N Virginia St
City Reno
State/province NV
ZIP/Postal code 89557
Country USA
 
Platform ID GPL5175
Series (1)
GSE37912 Peripheral blood gene expression as a novel genomic biomarker in complicated sarcoidosis

Data table header descriptions
ID_REF
VALUE RMA-calculated Signal intensity (log2 transformed)

Data table
ID_REF VALUE
3948543 9.388254
3063807 6.854637
3096575 7.945226
2949118 8.609281
3227645 7.570607
4014076 3.850212
2637819 2.588701
3850234 7.466976
3719161 8.763495
2916345 8.230413
2342904 5.814984
3817464 7.083771
2408437 6.889560
3932148 8.163145
3375091 8.134799
3653619 7.201282
2818035 4.972491
3063795 6.050149
2981874 6.847848
3227634 5.469602

Total number of rows: 21788

Table truncated, full table size 362 Kbytes.




Supplementary file Size Download File type/resource
GSM929853_C55.CEL.gz 23.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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