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Sample GSM931 Query DataSets for GSM931
Status Public on Feb 12, 2002
Title alpha factor release sample022
Sample type RNA
 
Channel 1
Source name asynchrnous control (prep3)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 22
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n51
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE22 Alpha-factor block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 345 344 241 743 374 367 369 393 397 790 .956 0 .72 1.715 21 24 .644 .607 1.552 1.647 1.289 1213 69 60 71 52 63 .72
2 342 344 103 541 172 368 369 393 183 576 .94 0 .829 2.273 11 20 .599 .563 1.67 1.777 1.089 1036 69 60 71 62 73 .829
3 345 344 101 563 194 375 369 393 206 599 .887 0 1.028 1.456 18 21 .521 .49 1.921 2.04 1.135 950 69 60 71 72 83 1.028
4 344 344 224 2050 1681 373 369 393 1788 2181 .921 0 2.997 2.159 23 30 .133 .125 7.504 7.982 7.601 950 69 60 71 82 93 2.997
5 342 344 94 700 331 371 369 393 352 745 .891 0 1.905 2.665 15 27 .284 .267 3.521 3.745 2.367 950 69 60 71 92 103 1.905
6 338 336 91 475 116 368 359 382 123 505 .894 0 .435 1.208 21 18 .784 .74 1.275 1.352 1.181 950 69 60 71 102 113 .435
7 329 328 179 467 108 363 359 382 115 497 .564 0 -.638 .924 34 26 1.657 1.557 .603 .642 .226 950 69 60 71 112 123 -.638
8 318 312 222 574 215 362 359 382 229 611 .902 0 .045 .952 43 36 1.033 .969 .968 1.032 .938 950 69 60 71 122 133 .045
9 309 312 73 455 86 365 369 393 91 484 .877 0 .318 .938 20 17 .849 .802 1.178 1.247 1.095 950 69 60 71 132 143 .318
10 301 296 26 421 52 366 369 393 55 448 .515 0 1.081 1.125 10 8 .5 .473 2 2.115 1.027 950 69 60 71 142 153 1.081
11 291 288 93 480 111 365 369 393 118 511 .956 0 .343 1.193 18 15 .838 .788 1.194 1.269 1.101 950 69 60 71 152 163 .343
12 285 288 26 406 47 362 359 382 50 432 .74 0 .943 1.094 10 7 .553 .52 1.808 1.923 .618 950 69 60 71 162 173 .943
13 282 280 7 364 366 369 393 387 -.044 0 .625 0 0 -.051 950 69 60 71 172 183
14 292 280 56 464 105 379 359 382 112 494 .963 0 1 1.25 10 10 .533 .5 1.875 2 1.927 950 69 60 71 182 193 1
15 292 280 141 496 137 379 359 382 146 528 .817 0 .05 1.25 14 20 1.029 .966 .972 1.035 .413 950 69 60 71 192 203 .05
16 295 280 115 506 137 382 369 393 145 538 .845 0 .334 1.375 11 14 .839 .793 1.191 1.261 1.054 950 69 60 71 202 213 .334
17 302 288 26 387 18 381 369 393 19 412 .65 0 -.453 1.607 7 4 1.444 1.368 .692 .731 .542 950 69 60 71 212 223 -.453
18 292 288 9 376 17 367 359 382 18 400 .549 0 1 1.458 2 2 .529 .5 1.889 2 .641 950 69 60 71 222 233 1
19 293 288 18741 468 109 368 359 382 116 498 0 0 -7.336 .008 76 23 171.936 161.56 .006 .006 0 950 69 60 71 232 243 -7.336
20 293 288 372 1416 1057 369 359 382 1124 1506 .867 0 1.595 2.679 53 62 .352 .331 2.841 3.022 2.578 950 69 60 71 242 253 1.595

Total number of rows: 7680

Table truncated, full table size 902 Kbytes.




Supplementary data files not provided
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