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Sample GSM942 Query DataSets for GSM942
Status Public on Feb 12, 2002
Title Elutriation2:Sample2:Time0.5hrs
Sample type RNA
 
Channel 1
Source name Ref Pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 2.2.2
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n58
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE24 Elutriation time course

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 522 496 352 825 497 345 328 349 529 878 .867 0 .588 1.075 30 28 .708 .665 1.412 1.503 1.396 621 69 1 12 75 86 .588
2 495 480 921 1497 1176 350 321 341 1252 1593 .501 0 .443 1.5 49 65 .783 .736 1.277 1.359 .605 453 69 1 12 85 96 .443
3 494 472 502 1271 943 370 328 349 1003 1352 .879 0 .999 1.946 37 63 .532 .5 1.878 1.998 1.512 372 69 1 12 95 106 .999
4 490 472 128 537 216 364 321 341 230 571 .715 0 .845 1.784 18 53 .593 .557 1.688 1.797 .988 381 69 1 12 105 116 .845
5 486 464 478 2548 2234 346 314 334 2377 2711 .924 0 2.314 4.375 44 69 .214 .201 4.674 4.973 4.762 390 69 1 12 115 126 2.314
6 475 456 201 653 354 327 299 318 377 695 .559 0 .907 2.125 24 57 .568 .533 1.761 1.876 .649 381 69 1 12 125 136 .907
7 470 448 599 625 326 321 299 318 347 665 .155 0 -.788 1.25 34 52 1.837 1.726 .544 .579 .028 381 69 1 12 135 146 -.788
8 474 440 78 569 270 320 299 318 287 605 .781 0 1.88 2.894 10 44 .289 .272 3.462 3.679 2.321 381 69 1 12 145 156 1.88
9 492 440 147 577 278 385 299 318 296 614 .7 0 1.01 2.257 20 49 .529 .497 1.891 2.014 .9 376 69 1 12 155 166 1.01
10 490 440 220 678 371 390 307 327 394 721 .706 0 .841 1.974 24 62 .593 .558 1.686 1.791 .917 376 69 1 12 165 176 .841
11 476 424 121 581 282 382 299 318 300 618 .924 0 1.31 1.962 15 49 .429 .403 2.331 2.479 1.85 376 69 1 12 175 186 1.31
12 445 416 123 569 277 377 292 311 294 605 .937 0 1.257 2.229 18 52 .444 .418 2.252 2.39 1.689 376 69 1 12 185 196 1.257
13 404 392 64 439 154 306 285 303 164 467 .761 0 1.358 1.686 10 30 .416 .39 2.406 2.563 1.434 376 69 1 12 195 206 1.358
14 435 384 167 543 251 353 292 311 267 578 .914 0 .677 1.508 15 37 .665 .625 1.503 1.599 1.223 376 69 1 12 205 216 .677
15 461 384 509 900 608 380 292 311 646 957 .919 0 .344 1.079 24 37 .837 .788 1.194 1.269 1.059 376 69 1 12 215 226 .344
16 458 376 617 1011 726 369 285 303 773 1076 .679 0 .325 .917 23 36 .85 .798 1.177 1.253 .471 376 69 1 12 225 236 .325
17 461 376 175 544 259 369 285 303 276 579 .823 0 .657 1.163 23 33 .676 .634 1.48 1.577 1.222 376 69 1 12 235 246 .657
18 428 376 118 440 169 324 271 288 180 468 .809 0 .609 1.086 18 26 .698 .656 1.432 1.525 1.276 376 69 1 12 245 256 .609
19 388 368 25971 547 283 284 264 281 301 582 0 0 -6.431 .011 97 57 91.77 86.282 .011 .012 0 376 69 1 12 255 266 -6.431
20 384 368 539 1604 1340 282 264 281 1425 1706 .868 0 1.403 2.216 62 75 .402 .378 2.486 2.644 2.213 376 69 1 12 265 276 1.403

Total number of rows: 7680

Table truncated, full table size 920 Kbytes.




Supplementary data files not provided
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