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Sample GSM943218 Query DataSets for GSM943218
Status Public on Jul 09, 2012
Title Human Whole blood RNA 18
Sample type RNA
 
Source name schizophrenia (SCZ)_Whole blood
Organism Homo sapiens
Characteristics age: 20
gender: male
status: schizophrenia (SCZ)
tissue: Whole blood
Extracted molecule total RNA
Extraction protocol Standard Qiagen PAXgene extraction (manual and Qiacube)
Label biotin
Label protocol Standard Illumina TotalPrep kit amplification and labeling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256290007_C
Data processing Data were backgroundcorrected in Beadstudio (v.3.2.3) and transformed (vst) and normalised (rsn) in Lumi (R package)
 
Submission date Jun 05, 2012
Last update date Jul 09, 2012
Contact name Simone de Jong
Organization name UCLA
Street address 695 Charles E. Young Drive south
City Los Angeles
State/province California
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6883
Series (2)
GSE38481 A gene co-expression network in whole blood of schizophrenia patients is independent of antipsychotic-use and enriched for brain-expressed genes [HumanRef-8 v3.0]
GSE38485 A gene co-expression network in whole blood of schizophrenia patients is independent of antipsychotic-use and enriched for brain-expressed genes

Data table header descriptions
ID_REF
VALUE Robust spline normalized
Detection

Data table
ID_REF VALUE Detection
ILMN_1762337 7.12206513 0.08871
ILMN_2055271 7.552781429 0.96129
ILMN_2383229 7.224883221 0.45968
ILMN_1806310 7.172383668 0.25645
ILMN_1779670 7.348448255 0.77419
ILMN_2321282 8.412516332 1
ILMN_1772582 7.238164871 0.50323
ILMN_1717783 7.113478827 0.07419
ILMN_1814316 7.156511053 0.20161
ILMN_2359168 7.32238692 0.74516
ILMN_1731507 7.214599302 0.43065
ILMN_1787689 7.609926109 0.98226
ILMN_1745607 7.134959128 0.11774
ILMN_2136495 7.137827667 0.13871
ILMN_1668111 7.129225806 0.10484
ILMN_2295559 7.211668221 0.41613
ILMN_1735045 7.103466443 0.05161
ILMN_1680754 7.516196283 0.93387
ILMN_2375184 7.250029168 0.54677
ILMN_1659452 7.371605417 0.79839

Total number of rows: 24526

Table truncated, full table size 714 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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