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Sample GSM943417 Query DataSets for GSM943417
Status Public on Jul 09, 2012
Title Human Whole blood RNA 212
Sample type RNA
 
Source name schizophrenia (SCZ)_whole blood
Organism Homo sapiens
Characteristics age: 53
gender: male
status: schizophrenia (SCZ)
tissue: whole blood
Extracted molecule total RNA
Extraction protocol Standard Qiagen PAXgene extraction (manual and Qiacube)
Label biotin
Label protocol Standard Illumina TotalPrep kit amplification and labeling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4455416166_G
Data processing Data were backgroundcorrected in Beadstudio (v. 3.2.3) and transformed (vst) and normalised (rsn) in Lumi (R package)
 
Submission date Jun 05, 2012
Last update date Jul 09, 2012
Contact name Simone de Jong
Organization name UCLA
Street address 695 Charles E. Young Drive south
City Los Angeles
State/province California
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6947
Series (2)
GSE38484 A gene co-expression network in whole blood of schizophrenia patients is independent of antipsychotic-use and enriched for brain-expressed genes [HumanHT-12 V3.0]
GSE38485 A gene co-expression network in whole blood of schizophrenia patients is independent of antipsychotic-use and enriched for brain-expressed genes

Data table header descriptions
ID_REF
VALUE Robust spline normalized
Detection

Data table
ID_REF VALUE Detection
ILMN_1802380 9.54021861 1
ILMN_1893287 7.485959136 0.85519
ILMN_1736104 7.393461105 0.28415
ILMN_1792389 8.275194564 1
ILMN_1854015 7.550561961 0.97268
ILMN_1904757 7.471026193 0.80738
ILMN_1740305 7.455893129 0.71038
ILMN_1665168 7.425046407 0.52186
ILMN_2375156 7.432829048 0.58333
ILMN_1705423 7.507973246 0.91667
ILMN_1716072 7.409343277 0.39481
ILMN_1697642 8.026672923 1
ILMN_1788184 7.52951204 0.95219
ILMN_1681845 9.89964658 1
ILMN_1823296 7.425046407 0.52186
ILMN_1889845 7.393461105 0.28415
ILMN_1746923 7.401424206 0.33197
ILMN_1690979 7.557467771 0.97814
ILMN_1811114 7.409343277 0.39481
ILMN_1660729 7.455893129 0.71038

Total number of rows: 48743

Table truncated, full table size 1472 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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