 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Mar 31, 2015 |
| Title |
AMM E02 |
| Sample type |
RNA |
| |
|
| Source name |
PB_neutrophils
|
| Organism |
Homo sapiens |
| Characteristics |
disease status: AMM
|
| Treatment protocol |
de novo MPN patients
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Extracted using Trizol according to manufacturure's recommendations
|
| Label |
Biotin
|
| Label protocol |
Please see Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (http://www.affymetrix.com/support/technical/byproduct.affx?product=amplification)
|
| |
|
| Hybridization protocol |
Please see Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (http://www.affymetrix.com/support/technical/byproduct.affx?product=amplification)
|
| Scan protocol |
Please see Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (http://www.affymetrix.com/support/technical/byproduct.affx?product=amplification)
|
| Description |
Gene expression array
|
| Data processing |
RMA : log2 transromation : quantile normalization : median polish using Partek GS version 6.5
|
| |
|
| Submission date |
Jun 06, 2012 |
| Last update date |
Mar 31, 2015 |
| Contact name |
Mike Harr |
| E-mail(s) |
harrm@mskcc.org
|
| Organization name |
Memorial Sloan-Ketering Cancer Center
|
| Lab |
Nimer
|
| Street address |
1275 York Ave.
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10065 |
| Country |
USA |
| |
|
| Platform ID |
GPL4685 |
| Series (1) |
| GSE38543 |
Expression of Autophagy Genes in Myeloproliferative Disorders |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
log2 RMA expression level |
| Data table |
| ID_REF |
VALUE |
| 1007_s_at |
2.28663 |
| 1053_at |
2.51271 |
| 117_at |
3.04358 |
| 121_at |
2.59176 |
| 1255_g_at |
2.13006 |
| 1294_at |
2.78158 |
| 1316_at |
2.28263 |
| 1320_at |
2.18533 |
| 1405_i_at |
2.94001 |
| 1431_at |
2.11264 |
| 1438_at |
2.1756 |
| 1487_at |
3.04863 |
| 1494_f_at |
2.30613 |
| 1598_g_at |
2.44167 |
| 160020_at |
2.41119 |
| 1729_at |
2.78301 |
| 177_at |
2.26777 |
| 1773_at |
2.32716 |
| 179_at |
2.49756 |
| 1861_at |
2.89522 |
Total number of rows: 22406
Table truncated, full table size 412 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM945085_5202764005791172120104.E02.CEL.gz |
2.6 Mb |
(ftp)(http) |
CEL |
| Processed data included within Sample table |
|
|
|
|
 |
