|
| Status |
Public on Jun 07, 2012 |
| Title |
UW_ChipSeq_WI-38_Input_4OHTAM_20nM_72hr |
| Sample type |
SRA |
| |
|
| Source name |
WI-38
|
| Organism |
Homo sapiens |
| Characteristics |
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: WI-38
cell organism: human
cell description: embryonic lung fibroblast cells, hTERT immortalized, includes Raf1 construct
cell karyotype: normal
cell lineage: endoderm
cell sex: F
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment: 4OHTAM_20nM_72hr
treatment description: 72 hours with 20 nM 4-hydroxytamoxifen (Stam)
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH002048
labexpid: DS18351
labversion: Bowtie 0.12.7
replicate: 1
|
| Biomaterial provider |
Dr. Carl Mann, SBIGeM
|
| Treatment protocol |
4OHTAM_20nM_72hr
|
| Growth protocol |
WI38_Stam_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
|
| |
|
| Submission date |
Jun 07, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (1) |
| GSE35583 |
Histone Modifications by ChIP-seq from ENCODE/University of Washington |
|
| Relations |
| SRA |
SRX190006 |
| BioSample |
SAMN01731485 |
| Named Annotation |
GSM945223_hg19_wgEncodeUwHistoneWi38InputOhtamStdRawRep1.bigWig |
