|
Status |
Public on Jun 07, 2012 |
Title |
UW_ChipSeq_LNCaP_H3K4me3 |
Sample type |
SRA |
|
|
Source name |
LNCaP
|
Organism |
Homo sapiens |
Characteristics |
lab: UW lab description: Stamatoyannopoulous - University of Washington datatype: ChipSeq datatype description: Chromatin IP Sequencing cell: LNCaP cell organism: human cell description: prostate adenocarcinoma, "LNCaP clone FGC was isolated in 1977 by J.S. Horoszewicz, et al., from a needle aspiration biopsy of the left supraclavicular lymph node of a 50-year-old caucasian male (blood type B+) with confirmed diagnosis of metastatic prostate carcinoma." - ATCC. (Horoszewicz et al. LNCaP Model of Human Prostatic Carcinoma. Cancer Research 43, 1809-1818, April 1983.) cell karyotype: cancer cell lineage: endoderm cell sex: M antibody: H3K4me3 antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3 antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated. antibody vendorname: Millipore antibody vendorid: 07-473 treatment: None treatment description: No special treatment or protocol applies control: std control description: Standard input signal for most experiments. controlid: wgEncodeEH001897 labexpid: DS18330 labversion: Bowtie 0.12.7 replicate: 1
|
Biomaterial provider |
ATCC
|
Treatment protocol |
None
|
Growth protocol |
LNCaP_Stam_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
|
|
|
Submission date |
Jun 07, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9052 |
Series (1) |
GSE35583 |
Histone Modifications by ChIP-seq from ENCODE/University of Washington |
|
Relations |
SRA |
SRX190023 |
BioSample |
SAMN01731502 |
Named Annotation |
GSM945240_hg19_wgEncodeUwHistoneLncapH3k04me3StdRawRep1.bigWig |
Named Annotation |
GSM945240_hg19_wgEncodeUwHistoneLncapH3k04me3StdRawRep2.bigWig |