|
Status |
Public on Jun 11, 2012 |
Title |
PSU_ChipSeq_G1E-ER4_H3K9me3 |
Sample type |
SRA |
|
|
Source name |
G1E-ER4
|
Organism |
Mus musculus |
Characteristics |
lab: PSU-m lab description: Hardison - Penn State University datatype: ChipSeq datatype description: Chromatin IP Sequencing cell: G1E-ER4 cell organism: mouse cell description: Gata1 restored erythroid cells, differentiation induced by estradiol (E2) cell sex: M antibody: H3K9me3 antibody antibodydescription: rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3 antibody targetdescription: Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions. antibody vendorname: Abcam antibody vendorid: ab8898 age: E0 age description: Embryonic day 0 (stem cell) control: None control description: No special treatment or protocol applies controlid: wgEncodeEM001921 replicate: 1 strain: 129 strain description: Strain 129, has widely available embryonic stem cells
|
Biomaterial provider |
Mitch Weiss lab
|
Treatment protocol |
diffProtD_24hr
|
Growth protocol |
G1E_ER4_E2_Hardison_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuHistone
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer II |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuHistone
|
|
|
Submission date |
Jun 11, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9250 |
Series (3) |
GSE36028 |
Histone Modifications by ChIP-seq from ENCODE/PSU |
GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
GSE51338 |
Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis |
|
Relations |
Reanalyzed by |
GSE61349 |
SRA |
SRX153185 |
BioSample |
SAMN01047988 |
Named Annotation |
GSM946545_mm9_wgEncodePsuHistoneG1eer4e2H3k09me3ME0S129InputRepSignalRep1.bigWig |
Named Annotation |
GSM946545_mm9_wgEncodePsuHistoneG1eer4e2H3k09me3ME0S129InputRepSignalRep2.bigWig |
Named Annotation |
GSM946545_mm9_wgEncodePsuHistoneG1eer4e2H3k09me3ME0S129InputSig.bigWig |