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Sample GSM958737 Query DataSets for GSM958737
Status Public on Jul 12, 2012
Title Caltech_RnaSeq_H1-hESC_1x75D
Sample type SRA
 
Source name H1-hESC
Organism Homo sapiens
Characteristics datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell sex: U
readtype: 1x75D
readtype description: Single 75 nt directed reads
insertlength: None
insertlength description: No special treatment or protocol applies
labexpid: 11009,10947
mapalgorithm: TH1014
mapalgorithm description: TopHat v1.0.14
readtype: 1x75D
readtype description: Single 75 nt directed reads
replicate: 1,2
insertlength description: No special treatment or protocol applies
treatment: None
treatment description: No special treatment or protocol applies
labexpid: 10947
mapalgorithm: TH1014
mapalgorithm description: TopHat v1.0.14
readtype: 1x75D
readtype description: Single 75 nt directed reads
replicate: 1
Biomaterial provider WiCell Research Institute
Treatment protocol None
Growth protocol missing
Extracted molecule polyA RNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCaltechRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCaltechRnaSeq
 
Submission date Jul 10, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE33480 RNA-seq from ENCODE/Caltech
Relations
SRA SRX159816
BioSample SAMN01087951
Named Annotation GSM958737_hg19_wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UMinusRawRep1V4.bigWig
Named Annotation GSM958737_hg19_wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UMinusRawRep2V4.bigWig
Named Annotation GSM958737_hg19_wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UPlusRawRep1V4.bigWig
Named Annotation GSM958737_hg19_wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UPlusRawRep2V4.bigWig

Supplementary file Size Download File type/resource
GSM958737_hg19_wgEncodeCaltechRnaSeqH1hescR1x75dSplicesRep1V2.bam 176.8 Mb (ftp)(http) BAM
GSM958737_hg19_wgEncodeCaltechRnaSeqH1hescR1x75dSplicesRep1V2.bam.bai.gz 488.1 Kb (ftp)(http) BAI
GSM958737_hg19_wgEncodeCaltechRnaSeqH1hescR1x75dSplicesRep2V2.bam 315.7 Mb (ftp)(http) BAM
GSM958737_hg19_wgEncodeCaltechRnaSeqH1hescR1x75dSplicesRep2V2.bam.bai.gz 555.6 Kb (ftp)(http) BAI
GSM958737_hg19_wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UMinusRawRep1V4.bigWig 28.7 Mb (ftp)(http) BIGWIG
GSM958737_hg19_wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UMinusRawRep2V4.bigWig 41.1 Mb (ftp)(http) BIGWIG
GSM958737_hg19_wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UPlusRawRep1V4.bigWig 26.0 Mb (ftp)(http) BIGWIG
GSM958737_hg19_wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UPlusRawRep2V4.bigWig 41.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA
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