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Sample GSM958739 Query DataSets for GSM958739
Status Public on Jul 12, 2012
Title Caltech_RnaSeq_HeLa-S3_1x75D
Sample type SRA
 
Source name HeLa-S3
Organism Homo sapiens
Characteristics datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell sex: U
readtype: 1x75D
readtype description: Single 75 nt directed reads
insertlength: None
insertlength description: No special treatment or protocol applies
labexpid: 11208,11207
mapalgorithm: TH1014
mapalgorithm description: TopHat v1.0.14
readtype: 1x75D
readtype description: Single 75 nt directed reads
replicate: 1,2
insertlength description: No special treatment or protocol applies
treatment: None
treatment description: No special treatment or protocol applies
labexpid: 11208
mapalgorithm: TH1014
mapalgorithm description: TopHat v1.0.14
readtype: 1x75D
readtype description: Single 75 nt directed reads
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HeLa-S3_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCaltechRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCaltechRnaSeq
 
Submission date Jul 10, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE33480 RNA-seq from ENCODE/Caltech
Relations
SRA SRX159818
BioSample SAMN01087953
Named Annotation GSM958739_hg19_wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UMinusRawRep1V4.bigWig
Named Annotation GSM958739_hg19_wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UMinusRawRep2V4.bigWig
Named Annotation GSM958739_hg19_wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UPlusRawRep1V4.bigWig
Named Annotation GSM958739_hg19_wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UPlusRawRep2V4.bigWig

Supplementary file Size Download File type/resource
GSM958739_hg19_wgEncodeCaltechRnaSeqHelas3R1x75dSplicesRep1V2.bam 99.1 Mb (ftp)(http) BAM
GSM958739_hg19_wgEncodeCaltechRnaSeqHelas3R1x75dSplicesRep1V2.bam.bai.gz 403.7 Kb (ftp)(http) BAI
GSM958739_hg19_wgEncodeCaltechRnaSeqHelas3R1x75dSplicesRep2V2.bam 123.0 Mb (ftp)(http) BAM
GSM958739_hg19_wgEncodeCaltechRnaSeqHelas3R1x75dSplicesRep2V2.bam.bai.gz 420.6 Kb (ftp)(http) BAI
GSM958739_hg19_wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UMinusRawRep1V4.bigWig 23.8 Mb (ftp)(http) BIGWIG
GSM958739_hg19_wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UMinusRawRep2V4.bigWig 26.4 Mb (ftp)(http) BIGWIG
GSM958739_hg19_wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UPlusRawRep1V4.bigWig 23.8 Mb (ftp)(http) BIGWIG
GSM958739_hg19_wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UPlusRawRep2V4.bigWig 26.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA
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