|
| Status |
Public on Jul 12, 2012 |
| Title |
Caltech_RnaSeq_NHEK_1x75D |
| Sample type |
SRA |
| |
|
| Source name |
NHEK
|
| Organism |
Homo sapiens |
| Characteristics |
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
readtype: 1x75D
readtype description: Single 75 nt directed reads
insertlength: None
insertlength description: No special treatment or protocol applies
labexpid: 11204
mapalgorithm: TH1014
mapalgorithm description: TopHat v1.0.14
readtype: 1x75D
readtype description: Single 75 nt directed reads
readtype description: Single 75 nt directed reads
insertlength: None
insertlength description: No special treatment or protocol applies
treatment: None
treatment description: No special treatment or protocol applies
labexpid: 11204
mapalgorithm: TH1014
mapalgorithm description: TopHat v1.0.14
readtype: 1x75D
readtype description: Single 75 nt directed reads
replicate: 1
|
| Biomaterial provider |
Lonza
|
| Treatment protocol |
None
|
| Growth protocol |
Keratinocyte_protocol.pdf
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCaltechRnaSeq
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCaltechRnaSeq
|
| |
|
| Submission date |
Jul 10, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (1) |
|
| Relations |
| SRA |
SRX159820 |
| BioSample |
SAMN01087955 |
| Named Annotation |
GSM958741_hg19_wgEncodeCaltechRnaSeqNhekR1x75dTh1014UMinusRawRep1V4.bigWig |
| Named Annotation |
GSM958741_hg19_wgEncodeCaltechRnaSeqNhekR1x75dTh1014UPlusRawRep1V4.bigWig |
