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Sample GSM958745 Query DataSets for GSM958745
Status Public on Jul 12, 2012
Title Caltech_RnaSeq_MCF-7_2x75_200
Sample type SRA
 
Source name MCF-7
Organism Homo sapiens
Characteristics datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
readtype: 2x75
readtype description: Paired 75 nt reads
insertlength: 200
insertlength description: insert length of 200nt
labexpid: 11582,12098,11581
mapalgorithm: TH1014
mapalgorithm description: TopHat v1.0.14
readtype: 2x75
readtype description: Paired 75 nt reads
replicate: 1,3,2
insertlength: 200
insertlength description: insert length of 200nt
treatment: None
treatment description: No special treatment or protocol applies
labexpid: 11581
mapalgorithm: TH1014
mapalgorithm description: TopHat v1.0.14
readtype: 2x75
readtype description: Paired 75 nt reads
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HUVEC_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCaltechRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCaltechRnaSeq
 
Submission date Jul 10, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE33480 RNA-seq from ENCODE/Caltech
Relations
Reanalyzed by GSE49712
Reanalyzed by GSE97211
SRA SRX159831
BioSample SAMN01087959
Named Annotation GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Th1014Il200SigRep1V4.bigWig
Named Annotation GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Th1014Il200SigRep2V4.bigWig
Named Annotation GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Th1014Il200SigRep3V4.bigWig

Supplementary file Size Download File type/resource
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200ExonsGencV3cRep1V3.gtf.gz 7.9 Mb (ftp)(http) GTF
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200ExonsGencV3cRep2V3.gtf.gz 7.8 Mb (ftp)(http) GTF
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200ExonsGencV3cRep3V3.gtf.gz 7.5 Mb (ftp)(http) GTF
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200GeneDeNovoRep1V3.gtf.gz 1.6 Mb (ftp)(http) GTF
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200GeneDeNovoRep2V3.gtf.gz 766.2 Kb (ftp)(http) GTF
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200GeneDeNovoRep3V3.gtf.gz 1.0 Mb (ftp)(http) GTF
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200GeneGencV3cRep1V3.gtf.gz 1.9 Mb (ftp)(http) GTF
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200GeneGencV3cRep2V3.gtf.gz 1.9 Mb (ftp)(http) GTF
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200GeneGencV3cRep3V3.gtf.gz 1.9 Mb (ftp)(http) GTF
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200JunctionsRep1V3.bigBed 4.7 Mb (ftp)(http) BIGBED
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200JunctionsRep2V3.bigBed 5.8 Mb (ftp)(http) BIGBED
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200JunctionsRep3V3.bigBed 4.2 Mb (ftp)(http) BIGBED
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep1V2.bam 877.8 Mb (ftp)(http) BAM
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep1V2.bam.bai.gz 741.2 Kb (ftp)(http) BAI
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep2V2.bam 1.1 Gb (ftp)(http) BAM
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep2V2.bam.bai.gz 768.6 Kb (ftp)(http) BAI
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep3V2.bam 1.1 Gb (ftp)(http) BAM
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep3V2.bam.bai.gz 707.0 Kb (ftp)(http) BAI
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200TSSRep1V3.gtf.gz 3.2 Mb (ftp)(http) GTF
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200TSSRep2V3.gtf.gz 3.1 Mb (ftp)(http) GTF
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200TSSRep3V3.gtf.gz 3.0 Mb (ftp)(http) GTF
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200TranscriptDeNovoRep1V3.gtf.gz 5.5 Mb (ftp)(http) GTF
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200TranscriptDeNovoRep2V3.gtf.gz 3.5 Mb (ftp)(http) GTF
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200TranscriptDeNovoRep3V3.gtf.gz 4.3 Mb (ftp)(http) GTF
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200TranscriptGencV3cRep1V3.gtf.gz 13.2 Mb (ftp)(http) GTF
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200TranscriptGencV3cRep2V3.gtf.gz 13.1 Mb (ftp)(http) GTF
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200TranscriptGencV3cRep3V3.gtf.gz 12.9 Mb (ftp)(http) GTF
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Th1014Il200SigRep1V4.bigWig 225.4 Mb (ftp)(http) BIGWIG
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Th1014Il200SigRep2V4.bigWig 161.3 Mb (ftp)(http) BIGWIG
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Th1014Il200SigRep3V4.bigWig 171.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA
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