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GEO accession:
Sample GSM96952
Query DataSets for GSM96952
Status
Public on Mar 15, 2006
Title
PRB3746 (HG-U133A)
Sample type
RNA
Source name
Brain tumor
Organism
Homo sapiens
Characteristics
who grade: IV with necrosis
age: 43
Sex: M
survival (weeks): 313
censor: no
specimen type: primary
matching sample: PRB3785 (HG-U133A)
Biomaterial provider
MD Anderson
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
biotin
Label protocol
Approximately 1-5 ug of total RNA was processed to produce biotynylated cRNA targets
Hybridization protocol
Standard Affymetrix procedure
Scan protocol
Standard Affymetrix procedure
Description
high-grade astrocytoma
Data processing
Affymetrix Microarray Suite Version 5.0
Submission date
Feb 16, 2006
Last update date
Sep 11, 2014
Contact name
Thomas D. Wu
E-mail(s)
twu@gene.com
Phone
650-225-5672
Organization name
Genentech, Inc.
Street address
1 DNA Way
City
South San Francisco
State/province
CA
ZIP/Postal code
94080
Country
USA
Platform ID
GPL96
Series (1)
GSE4271
Molecular subclasses of high-grade glioma: prognosis, disease progression, and neurogenesis
Relations
Reanalyzed by
GSM326773
Reanalyzed by
GSE61335
Data table header descriptions
ID_REF
Affymetrix Probe ID
VALUE
MAS5-calculated signal intensity
Data table
ID_REF
VALUE
AFFX-BioB-5_at
438.8
AFFX-BioB-M_at
552.7
AFFX-BioB-3_at
358.6
AFFX-BioC-5_at
1286.2
AFFX-BioC-3_at
733.4
AFFX-BioDn-5_at
1055.2
AFFX-BioDn-3_at
5770.1
AFFX-CreX-5_at
9761.6
AFFX-CreX-3_at
14029.1
AFFX-hum_alu_at
22898.6
AFFX-DapX-5_at
832.2
AFFX-DapX-M_at
2076.5
AFFX-DapX-3_at
2704.1
AFFX-LysX-5_at
240.5
AFFX-LysX-M_at
441.9
AFFX-LysX-3_at
876.1
AFFX-PheX-5_at
270
AFFX-PheX-M_at
459
AFFX-PheX-3_at
495.5
AFFX-ThrX-5_at
9452.9
Total number of rows:
22283
Table truncated, full table size
359 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM96952.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
GSM96952.EXP.gz
490 b
(ftp)
(http)
EXP
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