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GEO accession:
Sample GSM96954
Query DataSets for GSM96954
Status
Public on Mar 15, 2006
Title
PRB3748 (HG-U133A)
Sample type
RNA
Source name
Brain tumor
Organism
Homo sapiens
Characteristics
who grade: IV with necrosis
age: 45
Sex: M
survival (weeks): 70
censor: no
specimen type: primary
matching sample: PRB3780 (HG-U133A)
Biomaterial provider
MD Anderson
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
biotin
Label protocol
Approximately 1-5 ug of total RNA was processed to produce biotynylated cRNA targets
Hybridization protocol
Standard Affymetrix procedure
Scan protocol
Standard Affymetrix procedure
Description
high-grade astrocytoma
Data processing
Affymetrix Microarray Suite Version 5.0
Submission date
Feb 16, 2006
Last update date
Sep 11, 2014
Contact name
Thomas D. Wu
E-mail(s)
twu@gene.com
Phone
650-225-5672
Organization name
Genentech, Inc.
Street address
1 DNA Way
City
South San Francisco
State/province
CA
ZIP/Postal code
94080
Country
USA
Platform ID
GPL96
Series (1)
GSE4271
Molecular subclasses of high-grade glioma: prognosis, disease progression, and neurogenesis
Relations
Reanalyzed by
GSM326755
Reanalyzed by
GSE61335
Data table header descriptions
ID_REF
Affymetrix Probe ID
VALUE
MAS5-calculated signal intensity
Data table
ID_REF
VALUE
AFFX-BioB-5_at
296.5
AFFX-BioB-M_at
797.1
AFFX-BioB-3_at
252.8
AFFX-BioC-5_at
801.7
AFFX-BioC-3_at
764.4
AFFX-BioDn-5_at
839
AFFX-BioDn-3_at
4545.9
AFFX-CreX-5_at
8889.2
AFFX-CreX-3_at
12793.4
AFFX-hum_alu_at
22100
AFFX-DapX-5_at
918.7
AFFX-DapX-M_at
2218.4
AFFX-DapX-3_at
2971.2
AFFX-LysX-5_at
274.4
AFFX-LysX-M_at
465.9
AFFX-LysX-3_at
841.7
AFFX-PheX-5_at
263.4
AFFX-PheX-M_at
493.6
AFFX-PheX-3_at
517.6
AFFX-ThrX-5_at
8114.4
Total number of rows:
22283
Table truncated, full table size
358 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM96954.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
GSM96954.EXP.gz
493 b
(ftp)
(http)
EXP
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