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GEO accession:
Sample GSM96997
Query DataSets for GSM96997
Status
Public on Mar 15, 2006
Title
PRB4094 (HG-U133A)
Sample type
RNA
Source name
Brain tumor
Organism
Homo sapiens
Characteristics
who grade: IV with necrosis
age: 32
Sex: F
survival (weeks): 51
censor: no
specimen type: primary
matching sample: PRB4095 (HG-U133A)
Biomaterial provider
MD Anderson
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
biotin
Label protocol
Approximately 1-5 ug of total RNA was processed to produce biotynylated cRNA targets
Hybridization protocol
Standard Affymetrix procedure
Scan protocol
Standard Affymetrix procedure
Description
high-grade astrocytoma
Data processing
Affymetrix Microarray Suite Version 5.0
Submission date
Feb 16, 2006
Last update date
Sep 11, 2014
Contact name
Thomas D. Wu
E-mail(s)
twu@gene.com
Phone
650-225-5672
Organization name
Genentech, Inc.
Street address
1 DNA Way
City
South San Francisco
State/province
CA
ZIP/Postal code
94080
Country
USA
Platform ID
GPL96
Series (1)
GSE4271
Molecular subclasses of high-grade glioma: prognosis, disease progression, and neurogenesis
Relations
Reanalyzed by
GSM326766
Reanalyzed by
GSE61335
Data table header descriptions
ID_REF
Affymetrix Probe ID
VALUE
MAS5-calculated signal intensity
Data table
ID_REF
VALUE
AFFX-BioB-5_at
238.4
AFFX-BioB-M_at
475.3
AFFX-BioB-3_at
227
AFFX-BioC-5_at
813.4
AFFX-BioC-3_at
686.4
AFFX-BioDn-5_at
814.7
AFFX-BioDn-3_at
4544.7
AFFX-CreX-5_at
8404.9
AFFX-CreX-3_at
12111.8
AFFX-hum_alu_at
20403.3
AFFX-DapX-5_at
1134.2
AFFX-DapX-M_at
2855.5
AFFX-DapX-3_at
3507.8
AFFX-LysX-5_at
389.9
AFFX-LysX-M_at
582.6
AFFX-LysX-3_at
1215.9
AFFX-PheX-5_at
453.7
AFFX-PheX-M_at
637.9
AFFX-PheX-3_at
662.4
AFFX-ThrX-5_at
10882.9
Total number of rows:
22283
Table truncated, full table size
358 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM96997.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
GSM96997.EXP.gz
489 b
(ftp)
(http)
EXP
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