GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM97085
Query DataSets for GSM97085
Status
Public on Mar 15, 2006
Title
PRB3839 (HG-U133B)
Sample type
RNA
Source name
Brain tumor
Organism
Homo sapiens
Characteristics
who grade: IV with necrosis
age: 48
Sex: M
survival (weeks): 111
censor: no
specimen type: primary
matching sample: NA
Biomaterial provider
MD Anderson
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
biotin
Label protocol
Approximately 1-5 ug of total RNA was processed to produce biotynylated cRNA targets
Hybridization protocol
Standard Affymetrix procedure
Scan protocol
Standard Affymetrix procedure
Description
high-grade astrocytoma
Data processing
Affymetrix Microarray Suite Version 5.0
Submission date
Feb 16, 2006
Last update date
Sep 11, 2014
Contact name
Thomas D. Wu
E-mail(s)
twu@gene.com
Phone
650-225-5672
Organization name
Genentech, Inc.
Street address
1 DNA Way
City
South San Francisco
State/province
CA
ZIP/Postal code
94080
Country
USA
Platform ID
GPL97
Series (1)
GSE4271
Molecular subclasses of high-grade glioma: prognosis, disease progression, and neurogenesis
Relations
Reanalyzed by
GSE61335
Data table header descriptions
ID_REF
Affymetrix Probe ID
VALUE
MAS5-calculated signal intensity
Data table
ID_REF
VALUE
AFFX-BioB-5_at
1227.2
AFFX-BioB-M_at
3142.8
AFFX-BioB-3_at
1141.3
AFFX-BioC-5_at
3423.5
AFFX-BioC-3_at
2980.6
AFFX-BioDn-5_at
2872.8
AFFX-BioDn-3_at
15701
AFFX-CreX-5_at
36171.4
AFFX-CreX-3_at
51433
AFFX-hum_alu_at
85605.7
AFFX-DapX-5_at
3015.9
AFFX-DapX-M_at
10399.3
AFFX-DapX-3_at
14562.9
AFFX-LysX-5_at
1137.3
AFFX-LysX-M_at
3154
AFFX-LysX-3_at
4790.3
AFFX-PheX-5_at
2009.7
AFFX-PheX-M_at
3085.1
AFFX-PheX-3_at
3585.9
AFFX-ThrX-5_at
34358.7
Total number of rows:
22645
Table truncated, full table size
355 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM97085.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
GSM97085.EXP.gz
489 b
(ftp)
(http)
EXP
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
