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Sample GSM970852 Query DataSets for GSM970852
Status Public on Jul 20, 2012
Title UW_RnaSeq_Thymus_adult-8wks_C57BL/6
Sample type SRA
 
Source name Thymus
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: Thymus
cell organism: mouse
cell description: Thymus
cell sex: M
age: adult-8wks
age description: Adult 8 weeks
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
age: adult-8wks
age description: Adult 8 weeks
labversion: coverage
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 1
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider 1)LICR lab; 2)CSHL lab
Growth protocol Thymus_Stam_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model AB SOLiD System
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwRnaSeq
 
Submission date Jul 20, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10010
Series (2)
GSE39524 RNA-seq from ENCODE/UW
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
Relations
SRA SRX179451
BioSample SAMN01121042
Named Annotation GSM970852_mm9_wgEncodeUwRnaSeqThymusCellPolyaMAdult8wksC57bl6MinusRawRep1.bigWig
Named Annotation GSM970852_mm9_wgEncodeUwRnaSeqThymusCellPolyaMAdult8wksC57bl6MinusRawRep2.bigWig
Named Annotation GSM970852_mm9_wgEncodeUwRnaSeqThymusCellPolyaMAdult8wksC57bl6PlusRawRep1.bigWig
Named Annotation GSM970852_mm9_wgEncodeUwRnaSeqThymusCellPolyaMAdult8wksC57bl6PlusRawRep2.bigWig
Named Annotation GSM970852_mm9_wgEncodeUwRnaSeqThymusCellPolyaMAdult8wksC57bl6SigRep1.bigWig
Named Annotation GSM970852_mm9_wgEncodeUwRnaSeqThymusCellPolyaMAdult8wksC57bl6SigRep2.bigWig

Supplementary file Size Download File type/resource
GSM970852_mm9_wgEncodeUwRnaSeqThymusCellPolyaMAdult8wksC57bl6MinusRawRep1.bigWig 50.9 Mb (ftp)(http) BIGWIG
GSM970852_mm9_wgEncodeUwRnaSeqThymusCellPolyaMAdult8wksC57bl6MinusRawRep2.bigWig 70.9 Mb (ftp)(http) BIGWIG
GSM970852_mm9_wgEncodeUwRnaSeqThymusCellPolyaMAdult8wksC57bl6PlusRawRep1.bigWig 43.9 Mb (ftp)(http) BIGWIG
GSM970852_mm9_wgEncodeUwRnaSeqThymusCellPolyaMAdult8wksC57bl6PlusRawRep2.bigWig 61.4 Mb (ftp)(http) BIGWIG
GSM970852_mm9_wgEncodeUwRnaSeqThymusCellPolyaMAdult8wksC57bl6SigRep1.bigWig 89.6 Mb (ftp)(http) BIGWIG
GSM970852_mm9_wgEncodeUwRnaSeqThymusCellPolyaMAdult8wksC57bl6SigRep2.bigWig 123.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data not provided for this record
Raw data are available in SRA
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