NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM970853 Query DataSets for GSM970853
Status Public on Jul 20, 2012
Title UW_RnaSeq_NIH-3T3_immortalized_NIH/Swiss
Sample type SRA
 
Source name NIH-3T3
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: NIH-3T3
cell organism: mouse
cell description: fibroblast
cell sex: M
age: immortalized
age description: Immortal cells
strain: NIH/Swiss
strain description: An outbred Swiss mouse used as a general-purpose stock. Used extensively for pertussis HSF testing.
age: immortalized
age description: Immortal cells
labversion: coverage
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 1
strain description: An outbred Swiss mouse used as a general-purpose stock. Used extensively for pertussis HSF testing.
Biomaterial provider ATCC
Growth protocol NIH-3T3_Stam_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model AB SOLiD System
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwRnaSeq
 
Submission date Jul 20, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10010
Series (2)
GSE39524 RNA-seq from ENCODE/UW
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
Relations
Reanalyzed by GSE80793
SRA SRX179452
BioSample SAMN01121043
Named Annotation GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsMinusRawRep1.bigWig
Named Annotation GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsMinusRawRep2.bigWig
Named Annotation GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsPlusRawRep1.bigWig
Named Annotation GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsPlusRawRep2.bigWig
Named Annotation GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsSigRep1.bigWig
Named Annotation GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsMinusRawRep1.bigWig 61.6 Mb (ftp)(http) BIGWIG
GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsMinusRawRep2.bigWig 64.1 Mb (ftp)(http) BIGWIG
GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsPlusRawRep1.bigWig 56.2 Mb (ftp)(http) BIGWIG
GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsPlusRawRep2.bigWig 58.2 Mb (ftp)(http) BIGWIG
GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsSigRep1.bigWig 108.9 Mb (ftp)(http) BIGWIG
GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsSigRep2.bigWig 113.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data not provided for this record
Raw data are available in SRA
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap