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Sample GSM970872 Query DataSets for GSM970872
Status Public on Jul 20, 2012
Title UW_RnaSeq_MEL_adult-8wks_Unknown
Sample type SRA
 
Source name MEL
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: MEL
cell organism: mouse
cell description: Leukemia (K562 analog)
cell sex: M
age: adult-8wks
age description: Adult 8 weeks
strain: Unknown
strain description: Unknown strain origin
age: adult-8wks
age description: Adult 8 weeks
labversion: coverage
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 1
strain description: Unknown strain origin
Biomaterial provider Weissman lab
Growth protocol MEL_Stam_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model AB SOLiD System
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwRnaSeq
 
Submission date Jul 20, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10010
Series (2)
GSE39524 RNA-seq from ENCODE/UW
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
Relations
SRA SRX179471
BioSample SAMN01121062
Named Annotation GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknMinusRawRep1.bigWig
Named Annotation GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknMinusRawRep2.bigWig
Named Annotation GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknPlusRawRep1.bigWig
Named Annotation GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknPlusRawRep2.bigWig
Named Annotation GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknSigRep1.bigWig
Named Annotation GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknMinusRawRep1.bigWig 73.2 Mb (ftp)(http) BIGWIG
GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknMinusRawRep2.bigWig 55.0 Mb (ftp)(http) BIGWIG
GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknPlusRawRep1.bigWig 65.0 Mb (ftp)(http) BIGWIG
GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknPlusRawRep2.bigWig 47.7 Mb (ftp)(http) BIGWIG
GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknSigRep1.bigWig 126.8 Mb (ftp)(http) BIGWIG
GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknSigRep2.bigWig 94.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data not provided for this record
Raw data are available in SRA
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