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GEO accession:
Sample GSM97135
Query DataSets for GSM97135
Status
Public on Mar 15, 2006
Title
PRB4780 (HG-U133B)
Sample type
RNA
Source name
Brain tumor
Organism
Homo sapiens
Characteristics
who grade: III
age: 32
Sex: F
survival (weeks): 244
censor: no
specimen type: primary
matching sample: PRB4761 (HG-U133B)
Biomaterial provider
MD Anderson
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
biotin
Label protocol
Approximately 1-5 ug of total RNA was processed to produce biotynylated cRNA targets
Hybridization protocol
Standard Affymetrix procedure
Scan protocol
Standard Affymetrix procedure
Description
high-grade astrocytoma
Data processing
Affymetrix Microarray Suite Version 5.0
Submission date
Feb 16, 2006
Last update date
Jul 10, 2014
Contact name
Thomas D. Wu
E-mail(s)
twu@gene.com
Phone
650-225-5672
Organization name
Genentech, Inc.
Street address
1 DNA Way
City
South San Francisco
State/province
CA
ZIP/Postal code
94080
Country
USA
Platform ID
GPL97
Series (1)
GSE4271
Molecular subclasses of high-grade glioma: prognosis, disease progression, and neurogenesis
Data table header descriptions
ID_REF
Affymetrix Probe ID
VALUE
MAS5-calculated signal intensity
Data table
ID_REF
VALUE
AFFX-BioB-5_at
740.5
AFFX-BioB-M_at
1180.9
AFFX-BioB-3_at
736.4
AFFX-BioC-5_at
1999.3
AFFX-BioC-3_at
2017.2
AFFX-BioDn-5_at
1908
AFFX-BioDn-3_at
8807.6
AFFX-CreX-5_at
23315
AFFX-CreX-3_at
34994.9
AFFX-hum_alu_at
53409
AFFX-DapX-5_at
3283.6
AFFX-DapX-M_at
6538.7
AFFX-DapX-3_at
7811.1
AFFX-LysX-5_at
545.5
AFFX-LysX-M_at
1512.2
AFFX-LysX-3_at
2630.8
AFFX-PheX-5_at
813.7
AFFX-PheX-M_at
1230.9
AFFX-PheX-3_at
1073.2
AFFX-ThrX-5_at
23066.6
Total number of rows:
22645
Table truncated, full table size
354 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM97135.CEL.gz
3.1 Mb
(ftp)
(http)
CEL
GSM97135.EXP.gz
494 b
(ftp)
(http)
EXP
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