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Sample GSM973233 Query DataSets for GSM973233
Status Public on Jul 25, 2012
Title Stanford_RnaSeq_MEL_DMSO_2.0pct (superseded by GSE90279)
Sample type SRA
 
Source name MEL
Organism Mus musculus
Characteristics lab: Stanford-m
lab description: Snyder - Stanford University
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: MEL
cell organism: mouse
cell description: Leukemia (K562 analog)
cell sex: M
treatment: DMSO_2.0pct
treatment description: 5 d with 2% Dimethyl sufloxide (DMSO) (Weissman)
age: immortalized
age description: Immortal cells
readtype: 2x101D
readtype description: Paired 101 nt directed reads
replicate: 1
strain: Unknown
strain description: Unknown strain origin
Biomaterial provider Weissman lab
Treatment protocol DMSO_2.0pct
Extracted molecule total RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description ****************************
GSM973233 record metadata submitted on Jul 24 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE90279
****************************
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhRnaSeq
 
Submission date Jul 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (2)
GSE39619 RNA-seq from ENCODE/Stanford/Yale
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
Relations
Superseded by GSE90279
SRA SRX172456
BioSample SAMN01096242
Named Annotation GSM973233_MEL_DMSO_5D_RNASeq_rep1_120309_HAVERS_0279_AC0HAUACXX_L7_1.bigwig
Named Annotation GSM973233_MEL_DMSO_5D_RNASeq_rep1_120309_HAVERS_0279_AC0HAUACXX_L7_2.bigwig
Named Annotation GSM973233_MEL_DMSO_5D_RNASeq_rep2_120309_HAVERS_0279_AC0HAUACXX_L8_1.bigwig
Named Annotation GSM973233_MEL_DMSO_5D_RNASeq_rep2_120309_HAVERS_0279_AC0HAUACXX_L8_2.bigwig

Supplementary file Size Download File type/resource
GSM973233_MEL_DMSO_5D_RNASeq_rep1_120309_HAVERS_0279_AC0HAUACXX_L7_1.bigwig 261.8 Mb (ftp)(http) BIGWIG
GSM973233_MEL_DMSO_5D_RNASeq_rep1_120309_HAVERS_0279_AC0HAUACXX_L7_2.bigwig 268.1 Mb (ftp)(http) BIGWIG
GSM973233_MEL_DMSO_5D_RNASeq_rep2_120309_HAVERS_0279_AC0HAUACXX_L8_1.bigwig 266.4 Mb (ftp)(http) BIGWIG
GSM973233_MEL_DMSO_5D_RNASeq_rep2_120309_HAVERS_0279_AC0HAUACXX_L8_2.bigwig 273.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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