|
Status |
Public on Jul 25, 2012 |
Title |
Stanford_RnaSeq_MEL_DMSO_2.0pct (superseded by GSE90279) |
Sample type |
SRA |
|
|
Source name |
MEL
|
Organism |
Mus musculus |
Characteristics |
lab: Stanford-m lab description: Snyder - Stanford University datatype: RnaSeq datatype description: Sequencing analysis of RNA expression cell: MEL cell organism: mouse cell description: Leukemia (K562 analog) cell sex: M treatment: DMSO_2.0pct treatment description: 5 d with 2% Dimethyl sufloxide (DMSO) (Weissman) age: immortalized age description: Immortal cells readtype: 2x101D readtype description: Paired 101 nt directed reads replicate: 1 strain: Unknown strain description: Unknown strain origin
|
Biomaterial provider |
Weissman lab
|
Treatment protocol |
DMSO_2.0pct
|
Extracted molecule |
total RNA |
Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhRnaSeq
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2000 |
|
|
Description |
**************************** GSM973233 record metadata submitted on Jul 24 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE90279 ****************************
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhRnaSeq
|
|
|
Submission date |
Jul 24, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL13112 |
Series (2) |
GSE39619 |
RNA-seq from ENCODE/Stanford/Yale |
GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
|
Relations |
Superseded by |
GSE90279 |
SRA |
SRX172456 |
BioSample |
SAMN01096242 |
Named Annotation |
GSM973233_MEL_DMSO_5D_RNASeq_rep1_120309_HAVERS_0279_AC0HAUACXX_L7_1.bigwig |
Named Annotation |
GSM973233_MEL_DMSO_5D_RNASeq_rep1_120309_HAVERS_0279_AC0HAUACXX_L7_2.bigwig |
Named Annotation |
GSM973233_MEL_DMSO_5D_RNASeq_rep2_120309_HAVERS_0279_AC0HAUACXX_L8_1.bigwig |
Named Annotation |
GSM973233_MEL_DMSO_5D_RNASeq_rep2_120309_HAVERS_0279_AC0HAUACXX_L8_2.bigwig |