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GEO accession:
Sample GSM97405
Query DataSets for GSM97405
Status
Public on Jun 01, 2006
Title
F8 broiler by Fayoumi cross spleen day 8 high SE verse low SE load replicate 1
Sample type
RNA
Channel 1
Source name
High SE load total RNA
Organism
Gallus gallus
Characteristics
Two high SE load spleen total RNA were pooled
Extracted molecule
total RNA
Label
Cy3
Channel 2
Source name
Low SE load total RNA
Organism
Gallus gallus
Characteristics
Two low SE load spleen total RNA were pooled
Extracted molecule
total RNA
Label
Cy5
Description
spleen total RNA were amplified into aRNA. Two high SE load pooled samples were hybridized two low SE load samples
Data processing
LOWESS normalization, mixed model analysis by SAS
Submission date
Feb 19, 2006
Last update date
Feb 21, 2006
Contact name
Susan J Lamont
E-mail(s)
sjlamont@iastate.edu
Organization name
Iowa State University
Department
Animal Science
Street address
2255 Kildee Hall
City
Ames
State/province
IA
ZIP/Postal code
50011
Country
USA
Platform ID
GPL2863
Series (1)
GSE4273
F8 broiler by Leghorn and broiler by Fayoumi spleen at day 7 and 8 after challenge with SE
Data table header descriptions
ID_REF
VALUE
Natural log ratio of high SE verse low SE load
CH1_SIG_MEAN
CH1_SIG_MEAN
CH1_BKD_MEDIAN
CH1_BKD_MEDIAN
CH2_SIG_MEAN
CH2_SIG_MEAN
CH2_BKD_MEDIAN
CH2_BKD_MEDIAN
Data table
ID_REF
VALUE
CH1_SIG_MEAN
CH1_BKD_MEDIAN
CH2_SIG_MEAN
CH2_BKD_MEDIAN
C0004106_D1
null
16901.94643
30469.5
7324.321429
14503.5
C0004117_F15
null
15453.625
26872.5
7668.196429
14555
DT40subNB_15G4
null
4836.134615
10424
2957.962264
6496
C0004104_D9
null
25629.25
28763.5
13186.00901
14991
C0004112_L4
null
6840.035714
8553
3006.90991
3959
C0004103_I22
null
3115.969697
4236.5
1562.693878
2187
DT40subNB_15G8
null
8687.640351
10696.5
4584.365217
5109.5
C0004127_M15
null
9412.548673
9687
4517.33945
4955
C0004101_A14
null
7289.041237
7945
3867.568421
4270.5
C0004128_A3
null
2208.6
2808.5
1465.196262
1800.5
C0004122_D6
null
4161.681818
4064
2922.574074
3247
DT40subNB_15G12
null
6017.026786
6371.5
2680.419643
3003.5
C0004126_A8
null
2350.336364
2811
1459.825688
1780.5
C0004110_I13
null
6120.311927
6363
3145.376238
3460
C0004126_A7
null
8392.591304
8150
3532.459459
3818
C0004103_A22
null
5582.12963
6337
2856.616822
3103
C0004101_A15
null
3208.806122
3525.5
1628.494949
1873
C0004101_I13
null
3126.116505
3182
1312.138614
1551
C0004101_A23
null
3194.189189
3285.5
1291.811321
1499.5
C0004120_A24
null
2250.268519
2638.5
1439.509259
1624
Total number of rows:
15769
Table truncated, full table size
849 Kbytes
.
Supplementary data files not provided
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