NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM988430 Query DataSets for GSM988430
Status Public on Aug 21, 2012
Title IrW_27366602
Sample type genomic
 
Channel 1
Source name [test] EDTA blood from pedigreed Irish Wolfhound
Organism Canis lupus familiaris
Characteristics breed: Irish Wolfhound
gender: female
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was purified using commercial purification kits and the quality of the DNA was analyzed by spectrophotometry and agarose gel electrophoresis.
Label Cy3
Label protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
Channel 2
Source name [reference] EDTA blood from pedigreed Boxer
Organism Canis lupus familiaris
Characteristics breed: Boxer
gender: Male
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was purified using commercial purification kits and the quality of the DNA was analyzed by spectrophotometry and agarose gel electrophoresis.
Label Cy5
Label protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
 
Hybridization protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
Scan protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
Data processing Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
Submission date Aug 17, 2012
Last update date Aug 21, 2012
Contact name Matthew Webster
E-mail(s) matthew.webster@imbim.uu.se, jonas.berglund@imbim.uu.se
Organization name Uppsala University
Department IMBIM
Street address Box 582
City Uppsala
ZIP/Postal code 75123
Country Sweden
 
Platform ID GPL11335
Series (1)
GSE40210 Genome-wide array comparative genomic hybridization (aCGH) profiling of copy number variations (CNVs) in various dog breeds in comparison to a reference sample

Data table header descriptions
ID_REF
VALUE Normalized log2-transformed test/reference ratios (Cy3/Cy5)

Data table
ID_REF VALUE
CHR01FS003000891 0.25957
CHR01FS003002366 0.32172
CHR01FS003006126 0.44563
CHR01FS003008426 0.151
CHR01FS003009706 0.48417
CHR01FS003015159 0.59652
CHR01FS003019675 0.17303
CHR01FS003021107 -0.23624
CHR01FS003022577 0.2339
CHR01FS003029599 0.69046
CHR01FS003030794 0.23642
CHR01FS003031929 0.23532
CHR01FS003032959 0.87106
CHR01FS003038014 -0.15914
CHR01FS003039559 0.44385
CHR01FS003042089 0.53993
CHR01FS003043866 0.19984
CHR01FS003044907 0.60227
CHR01FS003046077 0.11073
CHR01FS003047027 0.00401

Total number of rows: 2164507

Table truncated, full table size 53581 Kbytes.




Supplementary file Size Download File type/resource
GSM988430_27366602_532.pair.gz 34.7 Mb (ftp)(http) PAIR
GSM988430_27366602_635.pair.gz 34.6 Mb (ftp)(http) PAIR
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap