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Sample GSM988434 Query DataSets for GSM988434
Status Public on Aug 21, 2012
Title NSD_27244502
Sample type genomic
 
Channel 1
Source name [test] EDTA blood from pedigreed Nova Scotia Duck Tolling Retriever
Organism Canis lupus familiaris
Characteristics breed: Nova Scotia Duck Tolling Retriever
gender: female
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was purified using commercial purification kits and the quality of the DNA was analyzed by spectrophotometry and agarose gel electrophoresis.
Label Cy3
Label protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
Channel 2
Source name [reference] EDTA blood from pedigreed Boxer
Organism Canis lupus familiaris
Characteristics breed: Boxer
gender: Male
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was purified using commercial purification kits and the quality of the DNA was analyzed by spectrophotometry and agarose gel electrophoresis.
Label Cy5
Label protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
 
Hybridization protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
Scan protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
Data processing Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
Submission date Aug 17, 2012
Last update date Aug 21, 2012
Contact name Matthew Webster
E-mail(s) matthew.webster@imbim.uu.se, jonas.berglund@imbim.uu.se
Organization name Uppsala University
Department IMBIM
Street address Box 582
City Uppsala
ZIP/Postal code 75123
Country Sweden
 
Platform ID GPL11335
Series (1)
GSE40210 Genome-wide array comparative genomic hybridization (aCGH) profiling of copy number variations (CNVs) in various dog breeds in comparison to a reference sample

Data table header descriptions
ID_REF
VALUE Normalized log2-transformed test/reference ratios (Cy3/Cy5)

Data table
ID_REF VALUE
CHR01FS003000891 -0.20292
CHR01FS003002366 -0.09311
CHR01FS003006126 0.72871
CHR01FS003008426 0.04495
CHR01FS003009706 0.13979
CHR01FS003015159 0.16216
CHR01FS003019675 -0.04207
CHR01FS003021107 -0.22084
CHR01FS003022577 0.03107
CHR01FS003029599 1.07389
CHR01FS003030794 -0.00587
CHR01FS003031929 -0.01006
CHR01FS003032959 0.03963
CHR01FS003038014 0.05262
CHR01FS003039559 0.50717
CHR01FS003042089 0.4057
CHR01FS003043866 -0.07293
CHR01FS003044907 0.17947
CHR01FS003046077 0.17477
CHR01FS003047027 -0.16927

Total number of rows: 2164507

Table truncated, full table size 53587 Kbytes.




Supplementary file Size Download File type/resource
GSM988434_27244502_532.pair.gz 35.1 Mb (ftp)(http) PAIR
GSM988434_27244502_635.pair.gz 35.1 Mb (ftp)(http) PAIR
Processed data included within Sample table
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