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Sample GSM988437 Query DataSets for GSM988437
Status Public on Aug 21, 2012
Title Sar_27206502
Sample type genomic
 
Channel 1
Source name [test] EDTA blood from pedigreed Sarloos
Organism Canis lupus familiaris
Characteristics breed: Sarloos
gender: female
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was purified using commercial purification kits and the quality of the DNA was analyzed by spectrophotometry and agarose gel electrophoresis.
Label Cy3
Label protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
Channel 2
Source name [reference] EDTA blood from pedigreed Boxer
Organism Canis lupus familiaris
Characteristics breed: Boxer
gender: Male
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was purified using commercial purification kits and the quality of the DNA was analyzed by spectrophotometry and agarose gel electrophoresis.
Label Cy5
Label protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
 
Hybridization protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
Scan protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
Data processing Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
Submission date Aug 17, 2012
Last update date Aug 21, 2012
Contact name Matthew Webster
E-mail(s) matthew.webster@imbim.uu.se, jonas.berglund@imbim.uu.se
Organization name Uppsala University
Department IMBIM
Street address Box 582
City Uppsala
ZIP/Postal code 75123
Country Sweden
 
Platform ID GPL11335
Series (1)
GSE40210 Genome-wide array comparative genomic hybridization (aCGH) profiling of copy number variations (CNVs) in various dog breeds in comparison to a reference sample

Data table header descriptions
ID_REF
VALUE Normalized log2-transformed test/reference ratios (Cy3/Cy5)

Data table
ID_REF VALUE
CHR01FS003000891 -0.0013
CHR01FS003002366 -0.11051
CHR01FS003006126 0.17749
CHR01FS003008426 -0.16469
CHR01FS003009706 -0.1297
CHR01FS003015159 0.39648
CHR01FS003019675 -0.65245
CHR01FS003021107 -0.27808
CHR01FS003022577 -0.00594
CHR01FS003029599 0.83544
CHR01FS003030794 0.10791
CHR01FS003031929 -0.145
CHR01FS003032959 0.14315
CHR01FS003038014 -0.00588
CHR01FS003039559 0.3124
CHR01FS003042089 -0.27628
CHR01FS003043866 0.17139
CHR01FS003044907 0.13003
CHR01FS003046077 -0.17787
CHR01FS003047027 -0.33901

Total number of rows: 2164507

Table truncated, full table size 53558 Kbytes.




Supplementary file Size Download File type/resource
GSM988437_27206502_532.pair.gz 35.1 Mb (ftp)(http) PAIR
GSM988437_27206502_635.pair.gz 35.1 Mb (ftp)(http) PAIR
Processed data included within Sample table
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