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Sample GSM988440 Query DataSets for GSM988440
Status Public on Aug 21, 2012
Title Sch_27370102
Sample type genomic
 
Channel 1
Source name [test] EDTA blood from pedigreed Schnauzer
Organism Canis lupus familiaris
Characteristics breed: Schnauzer
gender: male
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was purified using commercial purification kits and the quality of the DNA was analyzed by spectrophotometry and agarose gel electrophoresis.
Label Cy3
Label protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
Channel 2
Source name [reference] EDTA blood from pedigreed Boxer
Organism Canis lupus familiaris
Characteristics breed: Boxer
gender: Male
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was purified using commercial purification kits and the quality of the DNA was analyzed by spectrophotometry and agarose gel electrophoresis.
Label Cy5
Label protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
 
Hybridization protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
Scan protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
Data processing Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
Submission date Aug 17, 2012
Last update date Aug 21, 2012
Contact name Matthew Webster
E-mail(s) matthew.webster@imbim.uu.se, jonas.berglund@imbim.uu.se
Organization name Uppsala University
Department IMBIM
Street address Box 582
City Uppsala
ZIP/Postal code 75123
Country Sweden
 
Platform ID GPL11335
Series (1)
GSE40210 Genome-wide array comparative genomic hybridization (aCGH) profiling of copy number variations (CNVs) in various dog breeds in comparison to a reference sample

Data table header descriptions
ID_REF
VALUE Normalized log2-transformed test/reference ratios (Cy3/Cy5)

Data table
ID_REF VALUE
CHR01FS003000891 -0.01639
CHR01FS003002366 -0.09658
CHR01FS003006126 0.01798
CHR01FS003008426 -0.69786
CHR01FS003009706 0.04784
CHR01FS003015159 0.3748
CHR01FS003019675 -0.76994
CHR01FS003021107 0.07121
CHR01FS003022577 0.13738
CHR01FS003029599 0.75665
CHR01FS003030794 0.19032
CHR01FS003031929 0.30487
CHR01FS003032959 0.56864
CHR01FS003038014 -0.20202
CHR01FS003039559 0.28074
CHR01FS003042089 -0.29712
CHR01FS003043866 -0.35935
CHR01FS003044907 -0.34493
CHR01FS003046077 -0.31704
CHR01FS003047027 0.01286

Total number of rows: 2164507

Table truncated, full table size 53538 Kbytes.




Supplementary file Size Download File type/resource
GSM988440_27370102_532.pair.gz 35.0 Mb (ftp)(http) PAIR
GSM988440_27370102_635.pair.gz 34.9 Mb (ftp)(http) PAIR
Processed data included within Sample table
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