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Sample GSM988441 Query DataSets for GSM988441
Status Public on Aug 21, 2012
Title Elk_27271102
Sample type genomic
 
Channel 1
Source name [test] EDTA blood from pedigreed Swedish Elkhound
Organism Canis lupus familiaris
Characteristics breed: Swedish Elkhound
gender: female
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was purified using commercial purification kits and the quality of the DNA was analyzed by spectrophotometry and agarose gel electrophoresis.
Label Cy3
Label protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
Channel 2
Source name [reference] EDTA blood from pedigreed Boxer
Organism Canis lupus familiaris
Characteristics breed: Boxer
gender: Male
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was purified using commercial purification kits and the quality of the DNA was analyzed by spectrophotometry and agarose gel electrophoresis.
Label Cy5
Label protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
 
Hybridization protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
Scan protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
Data processing Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
Submission date Aug 17, 2012
Last update date Aug 21, 2012
Contact name Matthew Webster
E-mail(s) matthew.webster@imbim.uu.se, jonas.berglund@imbim.uu.se
Organization name Uppsala University
Department IMBIM
Street address Box 582
City Uppsala
ZIP/Postal code 75123
Country Sweden
 
Platform ID GPL11335
Series (1)
GSE40210 Genome-wide array comparative genomic hybridization (aCGH) profiling of copy number variations (CNVs) in various dog breeds in comparison to a reference sample

Data table header descriptions
ID_REF
VALUE Normalized log2-transformed test/reference ratios (Cy3/Cy5)

Data table
ID_REF VALUE
CHR01FS003000891 0.20039
CHR01FS003002366 0.64545
CHR01FS003006126 -0.16527
CHR01FS003008426 0.45939
CHR01FS003009706 -0.26194
CHR01FS003015159 0.28228
CHR01FS003019675 -0.21408
CHR01FS003021107 -0.06449
CHR01FS003022577 0.18636
CHR01FS003029599 0.72662
CHR01FS003030794 0.05489
CHR01FS003031929 -0.24864
CHR01FS003032959 -0.14929
CHR01FS003038014 0.62381
CHR01FS003039559 0.32889
CHR01FS003042089 0.31734
CHR01FS003043866 -0.20954
CHR01FS003044907 0.40062
CHR01FS003046077 -0.52204
CHR01FS003047027 0.16828

Total number of rows: 2164507

Table truncated, full table size 53563 Kbytes.




Supplementary file Size Download File type/resource
GSM988441_27271102_532.pair.gz 34.8 Mb (ftp)(http) PAIR
GSM988441_27271102_635.pair.gz 34.7 Mb (ftp)(http) PAIR
Processed data included within Sample table
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