NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM988444 Query DataSets for GSM988444
Status Public on Aug 21, 2012
Title Wlf_27736802
Sample type genomic
 
Channel 1
Source name [test] EDTA blood from pedigreed Wolf
Organism Canis lupus
Characteristics gender: female
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was purified using commercial purification kits and the quality of the DNA was analyzed by spectrophotometry and agarose gel electrophoresis.
Label Cy3
Label protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
Channel 2
Source name [reference] EDTA blood from pedigreed Boxer
Organism Canis lupus familiaris
Characteristics breed: Boxer
gender: Male
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was purified using commercial purification kits and the quality of the DNA was analyzed by spectrophotometry and agarose gel electrophoresis.
Label Cy5
Label protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
 
Hybridization protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
Scan protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
Data processing Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
Submission date Aug 17, 2012
Last update date Aug 21, 2012
Contact name Matthew Webster
E-mail(s) matthew.webster@imbim.uu.se, jonas.berglund@imbim.uu.se
Organization name Uppsala University
Department IMBIM
Street address Box 582
City Uppsala
ZIP/Postal code 75123
Country Sweden
 
Platform ID GPL11335
Series (1)
GSE40210 Genome-wide array comparative genomic hybridization (aCGH) profiling of copy number variations (CNVs) in various dog breeds in comparison to a reference sample

Data table header descriptions
ID_REF
VALUE Normalized log2-transformed test/reference ratios (Cy3/Cy5)

Data table
ID_REF VALUE
CHR01FS003000891 0.08532
CHR01FS003002366 0.03945
CHR01FS003006126 0.26866
CHR01FS003008426 -0.14578
CHR01FS003009706 0.4227
CHR01FS003015159 -0.0432
CHR01FS003019675 -0.8631
CHR01FS003021107 -0.35942
CHR01FS003022577 0.05864
CHR01FS003029599 0.27667
CHR01FS003030794 -0.25983
CHR01FS003031929 -0.31565
CHR01FS003032959 0.11266
CHR01FS003038014 -0.22869
CHR01FS003039559 0.43251
CHR01FS003042089 -0.36223
CHR01FS003043866 -0.29143
CHR01FS003044907 0.59243
CHR01FS003046077 0.31789
CHR01FS003047027 0.01716

Total number of rows: 2164507

Table truncated, full table size 53568 Kbytes.




Supplementary file Size Download File type/resource
GSM988444_27736802_532.pair.gz 34.7 Mb (ftp)(http) PAIR
GSM988444_27736802_635.pair.gz 34.7 Mb (ftp)(http) PAIR
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap