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Sample GSM988445 Query DataSets for GSM988445
Status Public on Aug 21, 2012
Title Wlf_27744002
Sample type genomic
 
Channel 1
Source name [test] EDTA blood from pedigreed Wolf
Organism Canis lupus
Characteristics gender: male
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was purified using commercial purification kits and the quality of the DNA was analyzed by spectrophotometry and agarose gel electrophoresis.
Label Cy3
Label protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
Channel 2
Source name [reference] EDTA blood from pedigreed Boxer
Organism Canis lupus familiaris
Characteristics breed: Boxer
gender: Male
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was purified using commercial purification kits and the quality of the DNA was analyzed by spectrophotometry and agarose gel electrophoresis.
Label Cy5
Label protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
 
Hybridization protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
Scan protocol Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
Data processing Standard NimbleGen protocols (http://www.nimblegen.com/products/lit/05434483001.pdf)
 
Submission date Aug 17, 2012
Last update date Aug 21, 2012
Contact name Matthew Webster
E-mail(s) matthew.webster@imbim.uu.se, jonas.berglund@imbim.uu.se
Organization name Uppsala University
Department IMBIM
Street address Box 582
City Uppsala
ZIP/Postal code 75123
Country Sweden
 
Platform ID GPL11335
Series (1)
GSE40210 Genome-wide array comparative genomic hybridization (aCGH) profiling of copy number variations (CNVs) in various dog breeds in comparison to a reference sample

Data table header descriptions
ID_REF
VALUE Normalized log2-transformed test/reference ratios (Cy3/Cy5)

Data table
ID_REF VALUE
CHR01FS003000891 -0.32233
CHR01FS003002366 -0.32007
CHR01FS003006126 0.06551
CHR01FS003008426 -0.22846
CHR01FS003009706 -0.21003
CHR01FS003015159 0.05403
CHR01FS003019675 -0.73991
CHR01FS003021107 -0.67438
CHR01FS003022577 -0.22989
CHR01FS003029599 0.64544
CHR01FS003030794 -0.1184
CHR01FS003031929 -0.57209
CHR01FS003032959 -0.34512
CHR01FS003038014 0.03878
CHR01FS003039559 0.46132
CHR01FS003042089 -0.48753
CHR01FS003043866 -0.46352
CHR01FS003044907 0.37218
CHR01FS003046077 0.51476
CHR01FS003047027 -0.29172

Total number of rows: 2164507

Table truncated, full table size 53550 Kbytes.




Supplementary file Size Download File type/resource
GSM988445_27744002_532.pair.gz 34.7 Mb (ftp)(http) PAIR
GSM988445_27744002_635.pair.gz 34.8 Mb (ftp)(http) PAIR
Processed data included within Sample table
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