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Sample GSM989 Query DataSets for GSM989
Status Public on Feb 12, 2002
Title alpha factor release sample019
Sample type RNA
 
Channel 1
Source name asynchronous control
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 19
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n89
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE22 Alpha-factor block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 296 296 27 312 314 312 422 422 .728 0 .486 6 2 .334 1102 87 33 44 65 76
2 302 304 164 395 75 314 320 432 102 534 .865 0 -.685 .742 18 11 2.187 1.608 .457 .622 .345 876 87 33 44 75 86 -.685
3 303 304 75 346 34 316 312 422 46 468 .882 0 -.705 .75 10 8 2.206 1.63 .453 .613 .298 751 87 33 44 85 96 -.705
4 303 304 43 336 24 316 312 422 32 454 .766 0 -.426 .6 12 6 1.792 1.344 .558 .744 .44 751 87 33 44 95 106 -.426
5 299 296 212 403 91 316 312 422 123 545 .939 0 -.785 .615 27 18 2.33 1.724 .429 .58 .425 751 87 33 44 105 116 -.785
6 296 296 37 325 13 315 312 422 17 439 .645 0 -1.122 .659 10 5 2.846 2.176 .351 .459 .302 751 87 33 44 115 126 -1.122
7 299 296 57 337 25 317 312 422 33 455 .747 0 -.788 .565 13 9 2.28 1.727 .439 .579 .414 756 87 33 44 125 136 -.788
8 303 296 316 473 153 318 320 432 207 639 .923 0 -.61 .532 41 25 2.065 1.527 .484 .655 .464 756 87 33 44 135 146 -.61
9 306 304 69 350 30 318 320 432 41 473 .822 0 -.751 .528 14 5 2.3 1.683 .435 .594 .379 756 88 33 44 145 156 -.751
10 309 312 76 360 40 317 320 432 54 486 .895 0 -.493 .638 12 11 1.9 1.407 .526 .711 .441 756 88 33 44 155 166 -.493
11 308 312 29 337 17 317 320 432 23 455 .661 0 -.334 .6 10 4 1.706 1.261 .586 .793 .434 751 88 33 44 165 176 -.334
12 308 312 77 362 42 317 320 432 57 489 .872 0 -.434 .558 14 11 1.833 1.351 .545 .74 .483 751 88 33 44 175 186 -.434
13 309 312 10 320 319 320 432 432 .313 0 1 3 0 .238 751 88 33 44 185 196
14 313 312 12 351 31 323 320 432 42 474 .56 0 1.807 1.333 5 4 .387 .286 2.583 3.5 .677 751 88 33 44 195 206 1.807
15 320 312 32 342 14 327 328 443 19 462 .56 0 -.752 .667 3 3 2.286 1.684 .438 .594 .352 753 88 33 44 205 216 -.752
16 326 320 15 337 9 333 328 443 12 455 .618 0 -.322 .826 3 1 1.667 1.25 .6 .8 .298 758 88 33 44 215 226 -.322
17 355 320 44 341 13 336 328 443 18 461 .578 0 -1.29 .7 10 1 3.385 2.444 .295 .409 .273 758 93 33 44 225 236 -1.29
18 370 320 40 338 10 334 328 443 14 457 .532 0 -1.515 .5 11 2 4 2.857 .25 .35 .309 760 87 33 44 236 247 -1.515
19 364 312 18297 381 53 332 328 443 72 515 0 0 -7.989 .007 51 14 345.226 254.125 .003 .004 0 762 87 33 44 246 257 -7.989
20 357 312 289 1696 1376 328 320 432 1860 2292 .866 0 2.686 4.066 34 42 .21 .155 4.761 6.436 3.907 762 87 33 44 256 267 2.686

Total number of rows: 7680

Table truncated, full table size 930 Kbytes.




Supplementary data files not provided
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