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Sample GSM992830 Query DataSets for GSM992830
Status Public on Jun 06, 2013
Title cKO_2
Sample type RNA
 
Source name Adrenal Gland -from Gata6 knockout
Organism Mus musculus
Characteristics gender: Virgin Females
strain: B6.FVB
tissue: Adrenal Gland
developmental stage: Adult
genotype/variation: Gata6 knockout mice
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen RNeasy mini Kit according to manufacturers directions.
Label Biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Conditional Knockout Replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Aug 27, 2012
Last update date Jun 06, 2013
Contact name Michael Dale Brooks
E-mail(s) michaedb@umich.edu
Organization name University of Michigan
Department Internal Medicine
Lab Max Wicha
Street address 2800 Plymouth Rd Building 26 Rm 329S
City Ann Arbor
State/province Michigan
ZIP/Postal code 48109
Country USA
 
Platform ID GPL6887
Series (1)
GSE40398 Genome wide analysis of Adrenal Gland tissue from Gata6 conditional knockout versus Control Adrenal tissue

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection p-value

Data table
ID_REF VALUE Detection p-value
ILMN_2417611 -5.073476 0.6538461
ILMN_2762289 2.778528 0.3461539
ILMN_2896528 12143.52 0
ILMN_2721178 3832.21 0
ILMN_2458837 -10.99261 0.8557692
ILMN_3033922 5032.755 0
ILMN_3092673 16206.07 0
ILMN_1230777 10696.09 0
ILMN_1246069 6994.599 0
ILMN_1232042 4.114312 0.3066239
ILMN_1243193 1511.218 0
ILMN_2524361 -5.854569 0.6901709
ILMN_1242440 -3.366603 0.5929487
ILMN_1233188 387.3611 0
ILMN_2543688 1316.282 0
ILMN_1259789 85.03028 0
ILMN_2816356 84.17453 0
ILMN_1224596 141.8323 0
ILMN_1233643 0.6071812 0.4348291
ILMN_2808939 1003.219 0

Total number of rows: 45281

Table truncated, full table size 1311 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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