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Sample GSM993424 Query DataSets for GSM993424
Status Public on Dec 31, 2012
Title Bcells_normal_p53(246/-)_rep2
Sample type RNA
 
Source name B cells_normal_p53(246/-)
Organism Mus musculus
Characteristics strain background: C57BL6/129 hybrid
genotype of the cells: p53(246/-)
tissue origin: spleen
cell type: B cells
b cell type: normal
Extracted molecule total RNA
Extraction protocol B cells were isolated by magnetic immuno-depletion method (MACS) and genotyped. Total RNA was extracted from all samples using Trizol and further purified by RNeasy RNA extraction kit (Qiagen). cDNA synthesis and amplification was performed using the WT cDNA synthesis and amplification kit (Nalgene).
Label biotin
Label protocol Samples were enzymatically fragmented and biotinylated using the WT Terminal Labeling Kit (Nalgene)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit materials as per manufactorere's instructions
Scan protocol Affymetrix Gene ChIP Scanner 3000 7G
Description 193P 2581.CEL
Data processing Data were processed using Partek software (v.6.5). Quantile normalization uisng GC-RMS method, gene level expression were summarized from the quantile normalized data.
probe group file: MoEx-1_0-st-v1.r2.pgf
meta-probeset file: MoEx-1_0-st-v1.r2.dt1.mm8.mps
 
Submission date Aug 28, 2012
Last update date Dec 31, 2012
Contact name Kanaga Sabapathy
Organization name National Cancer Centre Singapore
Street address 11 Hospital Drive
City Singapore
State/province Singapore
ZIP/Postal code 169610
Country Singapore
 
Platform ID GPL6096
Series (2)
GSE40415 Acute and long-term effects of mutant p53 in vivo [B cells]
GSE40417 Acute and long-term effects of mutant p53 in vivo

Data table header descriptions
ID_REF
VALUE Quantile normalized gene level expression values from Partek

Data table
ID_REF VALUE
6823768 8.11802
4321421 9.57084
6958212 4.54082
6933677 5.12997
6933678 5.22171
5079769 8.8603
6933679 5.06517
6983639 4.01399
6958216 9.75796
4821017 7.98483
4371380 4.18314
5614804 3.72189
4345860 3.79039
6873744 5.68723
4321437 7.67474
5384985 6.83559
6763840 3.96557
6763841 4.18276
6933697 4.69924
6958232 3.91581

Total number of rows: 23332

Table truncated, full table size 362 Kbytes.




Supplementary file Size Download File type/resource
GSM993424_193P_2581.CEL.gz 24.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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