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Status
Public on Mar 08, 2006
Title
brain, Right Frontal Lobe: Extract59_le1
Sample type
RNA
Source name
brain, Right Frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Right Frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Relations Reanalyzed by
GSM326686 Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1606.0104
P
0.006871
AFFX-BioB-M_at
3141.9849
P
0.000662
AFFX-BioB-3_at
1598.9312
P
0.004484
AFFX-BioC-5_at
5587.0884
P
0.000225
AFFX-BioC-3_at
4239.5073
P
0.000258
AFFX-BioDn-5_at
4567.218
P
0.000127
AFFX-BioDn-3_at
30069.674
P
0.000095
AFFX-CreX-5_at
43221.195
P
0.000044
AFFX-CreX-3_at
69405.12
P
0.000052
AFFX-DapX-5_at
308.4866
A
0.300606
AFFX-DapX-M_at
308.69284
A
0.185131
AFFX-DapX-3_at
54.410393
A
0.860518
AFFX-LysX-5_at
133.935
A
0.574038
AFFX-LysX-M_at
133.37086
A
0.712257
AFFX-LysX-3_at
42.37909
A
0.891021
AFFX-PheX-5_at
50.607056
A
0.772364
AFFX-PheX-M_at
31.641544
A
0.945787
AFFX-PheX-3_at
157.07037
A
0.396920
AFFX-ThrX-5_at
74.17277
A
0.760937
AFFX-ThrX-M_at
154.9757
A
0.559354
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99434.CEL.gz
3.4 Mb
(ftp) (http) CEL
