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Sample GSM99446

Query DataSets for GSM99446

Status

Public on Mar 08, 2006

Title

brain, Right Frontal Parietal: Extract65_le1

Sample type

RNA

Source name

brain, Right Frontal Parietal

Organism

Homo sapiens

Characteristics

tissue: brain, Right Frontal Parietal
histology: GBM
tumor number (as appears in figure 3): 1667
age: 44
gender: MALE
grade: 4
living: DECEASED
survival time: 588
survival cluster: SC2
hc_74_samples: HC2B
hc_85_samples: HC2B
array: 133A

Extracted molecule

total RNA

Extraction protocol

RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).

Label protocol

Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).

Hybridization protocol

Standard Affymetrix protocols were used.

Scan protocol

Standard Affymetrix protocols were used.

Description

GBM
Treatment, type=remove

Submission date

Mar 08, 2006

Last update date

Sep 11, 2014

Contact name

Winnie Liang

E-mail(s)

wliang@tgen.org

Organization name

Translational Genomics

Street address

445 N. Fifth Street

City

Phoenix

State/province

ZIP/Postal code

85012

Country

USA

Platform ID

GPL96

Series (1)

GSE4412

freij-affy-human-91666

Relations

Reanalyzed by

GSM326687

Reanalyzed by

GSE61335

Data table header descriptions
ID_REF	The name of the probe set, blank for control probes
VALUE	The signal value calculated by MAS 5 or GCOS software.
ABS_CALL	The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE	The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	530.5441	A	0.067678
AFFX-BioB-M_at	703.73126	P	0.011384
AFFX-BioB-3_at	182.57938	A	0.300606
AFFX-BioC-5_at	1281.9707	P	0.000297
AFFX-BioC-3_at	885.3949	P	0.003212
AFFX-BioDn-5_at	958.5198	P	0.003595
AFFX-BioDn-3_at	8897.274	P	0.001248
AFFX-CreX-5_at	9521.894	P	0.000044
AFFX-CreX-3_at	15528.662	P	0.000044
AFFX-DapX-5_at	135.86023	A	0.195266
AFFX-DapX-M_at	137.82693	A	0.108979
AFFX-DapX-3_at	15.39472	A	0.949771
AFFX-LysX-5_at	74.725365	A	0.340661
AFFX-LysX-M_at	140.5703	A	0.529760
AFFX-LysX-3_at	176.694	A	0.250796
AFFX-PheX-5_at	10.739207	A	0.966323
AFFX-PheX-M_at	18.217546	A	0.937071
AFFX-PheX-3_at	28.632462	A	0.860518
AFFX-ThrX-5_at	136.48679	A	0.514890
AFFX-ThrX-M_at	32.378674	A	0.737173

Total number of rows: 22283

Table truncated, full table size 687 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM99446.CEL.gz	3.6 Mb	(ftp)(http)	CEL